YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15808693
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	46	0.93
Transmembrane Helix	47	68	0.92
Cytoplasmic	69	78	0.80
Transmembrane Helix	79	98	0.95
Non-Cytoplasmic	99	138	0.93
Transmembrane Helix	139	159	0.93
Cytoplasmic	160	167	0.76
Transmembrane Helix	168	188	0.92
Non-Cytoplasmic	189	202	0.88
Transmembrane Helix	203	224	0.88
Cytoplasmic	225	239	0.84
Transmembrane Helix	240	258	0.91
Non-Cytoplasmic	259	269	0.70
Transmembrane Helix	270	291	0.93
Cytoplasmic	292	298	0.93
Transmembrane Helix	299	319	0.93
Non-Cytoplasmic	320	325	0.70
Transmembrane Helix	326	344	0.96
Cytoplasmic	345	355	0.83
Transmembrane Helix	356	379	0.89
Non-Cytoplasmic	380	401	0.92
Transmembrane Helix	402	425	0.93
Cytoplasmic	426	528	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNITYGVLQ APDGSSATSS AIAKGTDIIV SYGPNGESVA SYSPGDISWV LTCTALVWLM  60
   61 IPGLGYLYSG LARRKNAPHL LLLTLAALAV VSFQWFFWGY SLTFSQTSGA FLGNLRNFGY 120
  121 MGVLENPVPQ AYNKVPEIVY AIYQCMFANL VPAIAIGAAC ERGRVWPFLV FTFVWTTLVY 180
  181 DVIACWVWNP TGWAFKWGVL DYAGGGPVEI NSGITGLVIS YYLGPRTGYG TERLLFKPHN 240
  241 VSYIFLGTAF LWFGWIGFNG GSVFAANLRA AMAISTTNLA ASSAGLTWMF LDWRLERKWS 300
  301 VVGFCTGAIA GLVAITPAAG FVGMPAALLV GVVSSAVSNF ATVLKGPMRV DDVMDIFSVH 360
  361 ALAGIVGTLL TGIFAQASVA NNDGNTVIAG GWLDSNWIQL AYQLAYCVAV TCWCGGVTFA 420
  421 IMFVIDHIPY IGPFRSSEMG EVVGMDEDQC GEWAYDYAFI NRDLEGNYKP DHGQTLDINE 480
  481 KMPNVHQTDS LRSETHADSS QDNPNSQLAA AEHQSPSTAE PAVEMKQA