YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6625653
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	140	0.90
Transmembrane Helix	141	160	0.88
Non-Cytoplasmic	161	183	0.88
Transmembrane Helix	184	203	0.96
Cytoplasmic	204	216	0.82
Transmembrane Helix	217	235	0.95
Non-Cytoplasmic	236	241	0.74
Transmembrane Helix	242	261	0.95
Cytoplasmic	262	325	0.93
Transmembrane Helix	326	344	0.58
Non-Cytoplasmic	345	373	0.54
Transmembrane Helix	374	398	0.76
Cytoplasmic	399	439	0.50
Transmembrane Helix	440	462	0.79
Non-Cytoplasmic	463	467	0.33
Transmembrane Helix	468	490	0.84
Cytoplasmic	491	500	0.32
Transmembrane Helix	501	522	0.92
Non-Cytoplasmic	523	532	0.36

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIMELPESV EMTTTTTTSG IENLNSDLNH SVRRRRGSNG FEAASAINSS DANMSEDRRD  60
   61 VCGSGAGLET VNERSKSVGE SSDVIRKEDD RNDNVANGEE SKSTETTTTP FKFAYRASAP 120
  121 AHRRIKESPL SSDAIFKQSH AGLFNLCVVV LIAVNSRLII ENLMKYGLLI RAGFWFSSKS 180
  181 LRDWPLLMCC LSLQILPLAA FLVEKLAQQR HLTERAVVTL HITITTAAIL YPVLVILGCD 240
  241 SAFLFGVILM LVACIVWMKL VSYAHTNHDM RQLAKSTDKD ETSDGDFSYD VSFKSLAYFM 300
  301 VAPTLCYQLS YPHTPCIRKG WVARQFIKLV IFTGLMGFII EQYINPIVQN SQHPLKGNLL 360
  361 YAIERVLKLS VPNLYVWLCM FYCFFHLWLN ILAELLCFGD REFYKDWWNA KTIDEYWRMW 420
  421 NMPVHKWMVR HIYFPCLRNG IPKGVAILIA FLVSAVFHEL CIAVPCRLFK WWAFMGIMFQ 480
  481 VPLVILTNFL QNKFQSSMVG NMMFWCFFCI LGQPMCVLLY YHDVMNRKSS AR