YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5901826
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	141	0.74
Transmembrane Helix	142	159	0.58
Non-Cytoplasmic	160	165	0.74
Transmembrane Helix	166	186	0.93
Cytoplasmic	187	195	0.71
Transmembrane Helix	196	216	0.95
Non-Cytoplasmic	217	224	0.69
Transmembrane Helix	225	245	0.90
Cytoplasmic	246	263	0.73
Transmembrane Helix	264	285	0.88
Non-Cytoplasmic	286	298	0.82
Transmembrane Helix	299	320	0.91
Cytoplasmic	321	377	0.91
Transmembrane Helix	378	396	0.92
Non-Cytoplasmic	397	425	0.91
Transmembrane Helix	426	447	0.85
Cytoplasmic	448	458	0.78
Transmembrane Helix	459	478	0.86
Non-Cytoplasmic	479	684	0.91
Transmembrane Helix	685	708	0.71
Cytoplasmic	709	720	0.75
Transmembrane Helix	721	743	0.91
Non-Cytoplasmic	744	749	0.80
Transmembrane Helix	750	772	0.93
Cytoplasmic	773	810	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDKKNEIQP AAEPVAEPEP SPAAEIAPAS PDGSGPSAAA AEEVTPSVAT VEDTTPIAAP  60
   61 AESQPSGESN GTAEAKKLPE IAKKNGKEPD QNDKEPDQNG KELAETNDFK NVSETEGQQK 120
  121 KLPYPKSVFF IISNEFCERF NYYGMRTVLV LYLSRVLGYS DDTATVVFHI FTMFVYFLCV 180
  181 FGAIISDSWL GKFKTILYLS LVYICGSVLL TLGAIGRLNL PMETFTMLGL ALIALGSGGI 240
  241 KPCVSAFGGD QFKVPEQVKQ ITSFFSLFYF SINAGSLIST TVTPILREDV SCFDDINCYP 300
  301 LAFGVPAVLM IVSVIIFVLG RSLYKMKPPA GNMVVLVSST IWTALTTKCK EKKTNPREHW 360
  361 LDYADKKYDR QLIDDVKVLM RVLFLYLPLP VFWALFDQQG SRWTFQATRM DGDMGSWDIK 420
  421 PDQLQVLNPL LILIFIPLYD VALYPALKLV GIRRPLQKLT MGGILAGIAF IISGVVELSL 480
  481 EKTYPDLPYS QNIQLRIFNA DNCDYFFTSN IPGAENVTVT SLNAYTNKDI YAPGSLDVEF 540
  541 SLSSASEACT ISADKIPKVL TDNTAWSLFL NPLNGSGYYW EEDFVDKPSQ SHPLIRNVAN 600
  601 VPQELSIRWE KASTGEVVYD DLASKTLLTR VNSAEYVVMV GERNVGTFDV HTGGVYTLLI 660
  661 KDNNNIYEAN LEEVTSPNSV KILWLVPQYV VMTLGEVMFS VTGLEFSYAQ APPSMKSVLQ 720
  721 ACWLLTVAFG NVIVVVIAEA ALFESQASEF FLFAGLMFAD MLIFMVMAYY YVPNDPNKVE 780
  781 EAQPLTAGDA KTEIPALEGG VENKGKDINE