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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|13492037, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALPVWTLML LVGAAWGQEQ VPAWRPNSPD LGPMVHTSRE DSILSKCDFE DNSRPFCDWS  60
   61 QMSADDGDWI RTTGPSLTGT SGPPGGYPNG EGYYLHMDPK TFPQGGVARL RSPDIWEQGP 120
  121 LCVHFAFHMF GLSWGAQLRL LLLRGRKHLR PYVLWKHVNT QSPSWMPTTV TVPADHDIPS 180
  181 WLMFEGMRGN TAYLDISLDG LSIQRGTCNQ VCMSQMCTFD TLNDLCGWSW VPTATGAKWT 240
  241 QKKGPTGKQG VGPAEDFSNP GNGYYMLLDS TNARPGQKAV LLSPLSHSRG CMTLSFHYIM 300
  301 HGQGHEEGLF VYATFLGNIR KYTLFSGHPG PDWQAVSVNY TGQGQIQFMV VGMFGNIPEP 360
  361 AIAVDAISIA PCGESFPQCD FEDRVHPFCD WNQVYGDMGH WSWGSKSVPT LIAGSPREFP 420
  421 YGGEHYIFFD SVKLSQEGQS ARLVSPPFCA PGDICVEFAY HMYGLGKGTT LKLLLGSPAG 480
  481 SFPIPLWNRV GSQSSGWMNS SVTIPKGYQQ PMQLFIEATR GTSTAFVVAL NFILISHGPC 540
  541 RVLLQTEIPS SPLLPPTGPS ESTVPTLPME QPTSPTKATT VTIEIPTTPT EEATIPTETT 600
  601 TVPTEVINVS PKETSIPPEV TIPTEVITVS PEEIISPTEV TPVPTDVTAA YVEATNASPE 660
  661 ETSVPPEVTI LTEVTTVSPE ETTVPTEVPI VLIEATAFPT GETTLYTEVP TVPTEVTGVH 720
  721 TEVTNVSPEE TSVPTEETIS TEVTTVSPEE TTLPTEVPTV STEVTNVSPE ETSVPPEETI 780
  781 LTEITTVSPE ETVFPTEGTT LPTEVLTVPI EVTTFPTGET TVPTEVPTVS TEMTGVHTEV 840
  841 TTVFPEETSI PTEVATVLPA SIPPEETTTP TEVTTTPPEE TTIPAEVTTV PPVSIPSEET 900
  901 TTPTEVTTTP PEETTIPAEV TTVPPVSIPS EETTTPTEVT TTPPEETTIP AEVTTVPPVS 960
  961 IPSEETTIPT EVTTVPPEET TIPAEVTTVP PVSIPSEETT IPTEVTTVPP EETTIPAEVT1020
 1021 TTPPEETTIP TEVTTVPPAS IPPEETASLT EVTTTPPEET TTPTEVTTVP PEKTTIPTEV1080
 1081 TTVPPASIFP EETTVPPEET TIASEETTVS TQETTLLTEQ SAVTQTSIAC RPPCPSPPLM1140
 1141 PIGPLLSKPP GVSMFSLAPT TGVSTTESCP PNAHIELCAC PASCESPKPS CQPPCIPGCV1200
 1201 CNPGFLFSNN QCINESSCNC PYNNKYYKPG EEWFTPNCTE RCRCLPGSLM ECQISQCGTH1260
 1261 TVCQLKSDQY QCEPYGKATC LVYGDLHFVT FDERHIGFTG TCTYILTQTC SNSTDHFFRI1320
 1321 TANTEERGVE GVSCLDKVVI SLPETTVTMI SGRHTLIGDQ EVTLPAILSD DTYVGLSGRF1380
 1381 VELRTTFGLR VRWDGDQQLF VTVSSTFSGK LCGFCGNYDG DSSNDNLKSD GMMTHDEEEL1440
 1441 RLSWQVEEDE DKDWVSSRCQ KKKNPPSCDA ALGSTMSGPK LCGQLVNPSG PFEACLLHLK1500
 1501 ASSFLDNCVT DMCSFQGLQQ KLCAHMSAMT ATCQDAGYPV KPWREPQFCP LVCPKNSRYS1560
 1561 LCAKPCPETC HPISTTQHCS DKCVEGCECD PGFILSGSEC VPSSQCGCTS FQGRYFKVQE1620
 1621 QWFNPDCKEI CTCESHNHIL CKPWKCKAQE ACSYKNGVLG CHAQGAATCM VSGDPHYLTF1680
 1681 DGALHHFMGT CTYVLTQPCW SKSQENNFVV SATNEIHDGN LEVSYVKAVH VQVFDLKISM1740
 1741 FKGQKVVLNN QRVVLPVWPS QGRVTIRLSG IFVLLYTNFG LQVRYDGRHL VEVTVPSSYT1800
 1801 GSLCGLCGNY NNNSMDDNLR VDMKPAGNSL LLGAAWKILE ASDPGCFLVG GKPSRCADSD1860
 1861 MDDVWTKKCA ILMNPLGPFS NCHEAVPPQA SFSSCVYGQC ETNGDNLTLC HSLQAYASLC1920
 1921 AQAGQVTTWR NSTFCPMRCP PRSSYNPCAN SCPATCLTLS TPRDCPTLPC VEGCECQSGH1980
 1981 ILSGTTCVPL RQCGCSDQDG SYHLLGESWY TEKTCTTLCT CSAHSNITCS PTACKANHVC2040
 2041 LRQEGLLRCA AEMGECRISE DSQIVSFDDH SHPIQDTCTY ILVKVCHPNT NMPFFMISAK2100
 2101 TDINTNGKNK TFGVYQLYID IFNFHITLQK DHLVLISLIN DSIVTLPTTT HIPGVSVMTE2160
 2161 DVYTIVTIKD EIQVKFESNN FLDVKIPASS NGKVCGVCGN FNGEEEDELM TPSGELAEDE2220
 2221 QEFMNSWKDK SMDPNCQKIE GQNLQVEQQE IMNGKCRPID FEKAQANCQT ALQGPAWAHC2280
 2281 SSRVPIKPFL LKCMNSFCEF RELFRALCDS LQSFEDACQN QGLKPPIWRN SSFCPLECPA2340
 2341 HSHYTNCLPS CPPSCLDPDS RCEGSGHKVP ATCREGCICQ PDYVLLNDKC VLRSHCGCKD2400
 2401 AQGVFIPAGK TWISEDCTQS CTCMKGSMRC WDFQCPPGTY CKNSNDGSSN CVKISLQCPA2460
 2461 HSKFTDCLPP CHPSCSDPDG HCEGISTNAH SNCKEGCVCQ PGYVLRNDKC VLRIECGCQH2520
 2521 TQGGFIPAGK SWTSRGCSQS CDCMEGVIRC QNFQCPSGTY CQDIEDGTSN CANITLQCPA2580
 2581 HSSFTNCLPP CQPSCSDPEG HCGGSTTKAP SACQEGCVCE PDYVVLNNKC VPRIECGCKD2640
 2641 AQGVLIPADK IWINKGCTQT CACVTGTIHC RDFQCPSGTY CKDIKDDASN CTEITLQCPD2700
 2701 HSLYTHCLPS CLPSCSDPDG LCRGTSPEAP STCKEGCVCD PDYVLSNDKC VLRIECGCKD2760
 2761 AQGVLIPAGK TWINRGCTQS CSCMGGAIQC QNFKCPSEAY CQDLEDGNSN CTSIPLQCPA2820
 2821 HSHYTNCLPT CQPSCSDPDG HCEGSSTKAP SACKEGCVCE PDYVMLNNKC VPRIECGCKD2880
 2881 TQGVLIPADK TWINRGCTQS CTCKGGAIQC QKYHCSSGTY CKDMEDDSSS CATITLQCPA2940
 2941 HSHFTNCLPP CQPSCLDSEG HCEGSTTKAP SACQEGCVCE PDYVVLNNKC VPRIECGCKD3000
 3001 AQGVLIPADK TWINRGCTQS CTCKGGAIQC QKFQCPSETY CKDIEDGNSN CTRISLQCPA3060
 3061 NSNFTSCLPS CQPSCSNTDV HCEGSSPNTL SSCREGCVCQ SGYVLHNDKC ILRNQCGCKD3120
 3121 AQGALIPEGK TWITSGCTQS CNCTGGAIQC QNFQCPLKTY CKDLKDGSSN CTNIPLQCPA3180
 3181 HSRYTNCLPS CPPSCLDPEG LCEGTSPKVP STCREGCICQ PGYLMHKNKC VLRIFCGCKN3240
 3241 TQGAFISADK TWISRGCTQS CTCSAGAIHC RNFKCPSGTY CKNGDNGSSN CTEITLQCPT3300
 3301 NSQFTDCLPS CVPSCSNRCE VTSPSVPSSC REGCLCNHGF VFSEDKCVPR TQCGCKDARG3360
 3361 AIIPAGKTWT SKGCTQSCAC VEGNIQCQNF QCPPETYCKD NSEGSSTCTK ITLQCPAHTQ3420
 3421 YTSCLPSCLP SCLDPEGLCK DISPKVPSTC KEGCVCQSGY VLNSDKCVLR AECDCKDAQG3480
 3481 ALIPAGKTWT SPGCTQSCAC MGGAVQCQSS QCPPGTYCKD NEDGNSNCAK ITLQCPAHSL3540
 3541 FTNCLPSCLP SCLDPDGLCK GASPKVPSTC KEGCICQSGY VLSNNKCLLR NRCGCKDAHG3600
 3601 ALIPEDKTWV SRGCTQSCVC TGGSIQCLSF QCPPGAYCKD NEDGSSNCAR IPPQCPANSH3660
 3661 YTDCFPPCPP SCSDPEGHCE ASGPRVPSTC REGCLCNPGF VLDRDKCVPR VECGCKDAQG3720
 3721 ALIPSGKTWT SPGRTQSCAC MGGVVQCQSS QCPPGTYCKD NEDGNSNCAK ITLQCPTHSN3780
 3781 YTDCLPFCLP SCLDPSALCG GTSPKGPSTC KEGCVCQPGY VLDKDKCILK IECGCKDTQG3840
 3841 AVIPAGKTWL STGCIQSCAC VEGTIQCQNF QCPPGTYCNH NNNCAKIPLQ CPAHSHFTSC3900
 3901 LPSCPPSCAN LDGSCEQTSP KVPSTCKEGC LCQPGYFLNN GKCVLQTHCD CKDAEGGLVP3960
 3961 AGKTWTSKDC TQSCACTGGA VQCQNFQCPL GTYCKDSGDG SSNCTKIHKG AMGDGVLMAG4020
 4021 GIRALQCPAH SHFTSCLPSC PPSCSNLDGS CVESNFKAPS VCKKGCICQP GYLLNNDKCV4080
 4081 LRIQCGCKDT QGGLIPAGRT WISSDCTKSC SCMGGTIQCR DFQCPPGTYC KESNDSSRTC4140
 4141 AKIPLQCPAH SHYTNCLPAC SRSCTDLDGH CEGTSPKVPS PCKEGCLCQP GYVVHNHKCV4200
 4201 LQIHCGCKDA QGGFVPAGKT WISRGCTQSC ACVGGAVQCH NFTCPTGTQC QNSSCSKITV4260
 4261 QCPAHSHYTT CLPSCLPSCF DPEGLCGGAS PRAPSTCREG CVCEADYVLR EDKCVLRTQC4320
 4321 GCKDAQGDLI PANKTWLTRG CAQKCTCKGG NIHCWNFKCP LGTECKDSVD GGSNCTKIAL4380
 4381 QCPAHSHHTY CLPSCIPSCS NVNDRCESTS LQRPSTCIEG CLCHSGFVFS KDKCVPRTQC4440
 4441 GCKDSQGTLI PAGKNWITTG CSQRCTCTGG LVQCHDFECP SGAECQDIED GNSNCVEITV4500
 4501 QCPAHSHYSK CLPPCQPSCS DPDGHCEGTS PEAPSTCEEG CVCEPDYVLS NDKCVPSSEC4560
 4561 GCKDAHGVLI PESKTWVSRG CTKNCTCKGG TVQCHDFSCP TGSRCLDNNE GNSNCVTYAL4620
 4621 KCPAHSLYTN CLPSCLPSCS DPEGLCGGTS PEVPSTCKEG CICQSGYVLH KNKCMLRIHC4680
 4681 DCKDFQGSLI KTGQTWISSG CSKICTCKGG FFQCQSYKCP SGTQCEESED GSSNCVSSTM4740
 4741 KCPANSLYTH CLPTCLPSCS NPDGRCEGTS HKAPSTCREG CVCQPGYLLN KDTCVHKNQC4800
 4801 GCKDIRGNII PAGNTWISSD CTQSCACTDG VIQCQNFVCP SGSHCQYNED GSSDCAANKL4860
 4861 ERCTIFGDPY YLTFDGFTYH FLGRMNYYLI KTVDKLPRGI EPLIMEGRNK ISPKGSSTLH4920
 4921 EVTTIVYGYK IQLQEELVVL VNDEKVAVPY NPNEHLRVML RAQRLLLVTD FEMVLDFDGK4980
 4981 HSAVISLPTT YRGLTRGLCG NYDRDQSNEL MLPSGVLTSN VHVFGNSWEV KAQHAFFRFP5040
 5041 RALPEDEERD EEPDLLQSEC SQEQTALISS TQACRVLVDP QGPFAACHQI IAPEPFEQRC5100
 5101 MLDMCTGWKT KEEEELRCRV LSGYAIICQE AGANMTGWRD HTHCAMTCPA NTVYQRCMTP5160
 5161 CPASCAKFVT PKVCEGPCVE GCASLPGYIY SDTQSLPVTH CGCTADGIYY KLGDSFVTND5220
 5221 CSQHCTCASQ GILLCEPYGC RAGESCMVAN FTRGCFQDSP CLQNPCHNDG RCEEQGATFI5280
 5281 CHCDFGYGGE FCTEPQDITT RKKIEASSLV AILPGVLVMV LVPVLLPRVY VYMATRTTMG5340
 5341 RRRMKRKEKK LLRQSRLRLE DADVPEPTFK ATEF

YRC Informatics Platform - Version 3.0
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