YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3192969
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	85	0.97
Transmembrane Helix	86	105	0.91
Non-Cytoplasmic	106	123	0.89
Transmembrane Helix	124	147	0.91
Cytoplasmic	148	584	0.99
Transmembrane Helix	585	608	0.79
Non-Cytoplasmic	609	616	0.66
Transmembrane Helix	617	637	0.60
Cytoplasmic	638	657	0.67
Transmembrane Helix	658	683	0.89
Non-Cytoplasmic	684	719	0.70
Transmembrane Helix	720	740	0.58
Cytoplasmic	741	754	0.81
Transmembrane Helix	755	773	0.95
Non-Cytoplasmic	774	788	0.59
Transmembrane Helix	789	804	0.63
Cytoplasmic	805	839	0.69
Transmembrane Helix	840	859	0.84
Non-Cytoplasmic	860	869	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VDQSILTGES VSVIKHTDPV PDPRAVNQDK KNMLFSGTNI AAGKAMGVVV ATGVNTEIGK  60
   61 IRDEMVATEQ ERTPLQQKLD EFGEQLSKVI SLICIAVWII NIGHFNDPVH GGSWIRGAIY 120
  121 YFKIAVALAV AAIPEGLPAV ITTCLALGTR RMAKKNAIVR SLPSVETLGC TSVICSDKTG 180
  181 TLTTNQMSVC RMFILDKVEG DTCSLNEFTI TGSTYAPIGE VQKDDKPVKC HQYDGLVELA 240
  241 TICALCNDSA LDYNEAKGVY EKVGEATETA LTCLVEKMNV FDTELKGLSK IERANACNSV 300
  301 IKQLMKKEFT LEFSRDRKSM SVYCTPNKPS RTSMSKMFVK GAPEGVIDRC THIRVGSTKV 360
  361 PMTPGVKQKI MSVIREWGSG SDTLRCLALA THDNPLRREE MHLEDSANFI KYETNLTFVG 420
  421 CVGMLDPPRI EVASSVKLCR QAGIRVIMIT GDNKGTAVAI CRRIGIFGQD EDVTSKAFTG 480
  481 REFDELSPSA QRDACLNARC FARVEPSHKS KIVEFLQSFD EITAMTGDGV NDAPALKKSE 540
  541 IGIAMGSGTA VAKTASEMVL ADDNFSTIVA AVEEGRAIYN NMKQFIRYLI SSNVGEVVCI 600
  601 FLTAALGFPE ALIPVQLLWV NLVTDGLPAT ALGFNPPDLD IMNKPPRNPK EPLISGWLFF 660
  661 RYLAIGCYVG AATVGAAAWW FIAADGGPRV SFYQLSHFLQ CKEDNPDFEG VDCAIFESPY 720
  721 PMTMALSVLV TIEMCNALNS LSENQSLLRM PPWENIWLVG SICLSMSLHF LILYVEPLPL 780
  781 IFQITPLNLT QWLMVLKISL PVILMDETLK FVARNYLEPG KECAQPATKP SCSLSACTDG 840
  841 ISWPFVLLIM PLVVWVYSTD TNFSDMFWS