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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|15705366
Protein type: Transmembrane
Type Confidence: 0.89
Topology Confidence: 0.36
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWRYNCPSVI PVNARGAVKC RSLLCCPGFA TIVLAVSPLA FILRSALALS GFFPSCPLWV  60
   61 SLFGVGFLAS AKGKRVCAIG RSSLGKISDP LEVPNLLDLQ LDSFDWLIGG PRWRVALDAY 120
  121 RKNPSGAPIA EKSGLDEVFD EISPIEDSAG NMQLNFSKPV LEAEELSVRE CRVRGRTYSA 180
  181 PLYVEAEFMN HDTGEIKTQT VFMGDFPLMT DKGTFVINGT ERVVVSQLVR SPGVYFERTP 240
  241 EKNSEKDLFS GRIIPARGAW LEFEVDRHDQ LGVRVDRKRR QPVIFFLRAI GMTDDEIRDA 300
  301 FGEFESISVQ HEKNIGLSRD DALREIYRRV RPGEQASAEA GRALLENFYF TSRRFDLARV 360
  361 GRYKVNRKLG VDVDPTRMVL TRSDIIATIR YLAALHLGFS EVAVLNSNKS VPISTDDIDH 420
  421 LGNRRIRPVG ELVQNQLRAG LARMERVVRE RMTTQDIEAI IPQTLINVMP IVAALKEFYG 480
  481 TSQLSQFMDQ NNPLAGLTHK RRLSALGPGG LSRERAGVEV RDVNPSHYGR MCPIETPEGP 540
  541 NIGLIGSLAC YSRVNSFGFI ETPYRRVVNG KVTDDIEYMT ATQEDEHAIA QASTPLRPDN 600
  601 SFVDERVLVR RKGGEVEVVP ADQVDYMDVS GRQMVSVATS LIPFLEHNDA NRALMGSNMQ 660
  661 RQAVPLLVTE SPLVGTGMER YVAIDAGDVL IAEDPGIVGD VSADVVTVKQ DDGKHRDYHV 720
  721 GKFVRSNQGN CYNQXVVVRS GDRVEKGTVL AHGPCTDKGE LSLGRNLLVA FMPWEGYNFE 780
  781 DAIIISQNLV KDDTLSSIHI EEHEVSTRDT KLGSEEITRD LPNVSMDYIK DLDERGIIRI 840
  841 GAEVGPGDIL VGKVTPKGET ELSAEERLLR AIFNEKSMEV RDTSLKVPHG QQGTVIDVKL 900
  901 FDAVDGEDKL GAGINQRVVV YIAHKRKITE GDKLAGRHGN KGVISKILPV EDMPFMADGT 960
  961 PVDIILNPLG VPARMNFGQV LETHLGWISK QGWKIEGDPD WAKDIRVREA QPDSRVSSPV1020
 1021 FDGISEGEIT GLFSSVFPNR DGERAVGSDG KAILYDGRTG EPFPEPISVG YMYVLKLHHL1080
 1081 VDDKIHARST GPYSMITQQP LGGKAQFGGQ RFGEMEVWAL EAYGAAHALQ ELLTIKSDDV1140
 1141 VGRVKVYDAI VKGYPIPTPG VPESFKVIVK EMQSLCINIE VVSDGEDDVS ADAETLQIEE1200
 1201 GLDTSPKVEV GSLEEV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle