YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2257566
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNELCNCKC YVDHLQERKK KNIYIYYRKP QLTKQLTLGS FTQGLIVGQL LTLAIIYVFL  60
   61 RFFLFCSPIP KSVANSPKQT GNETPDETPS TPLSNNKKRY KKPLTILEPH ILNLLYDVNE 120
  121 HEPESLDWFN VLIAQALIQF RYDACSNDVA LRKLETVLNK GAQDKSMVDH IYVRDLSLGD 180
  181 GFPVFSHCRV LPHQHNSSQL RAEMLVSLTD NINCTVDTKL LLNFPKPAFA TLPLSITVRI 240
  241 CKFVGKVSLF TTLIVYSLYD SLHPSPGGLK HQVLNRITVI MIYFSPSNGA GQPAYMNLSF 300
  301 DPNFVISLQV SSLVGARSKL QDIPKITQLI ESRIRQWFTN RCVSPQFQQI AIPNLWPTSA 360
  361 KEGHARSHAP QEESSNED

Type	Start	End	Confidence
Cytoplasmic	1	37	0.82
Transmembrane Helix	38	60	0.83
Non-Cytoplasmic	61	378	0.89