YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5922597
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNFFRGLGK KKVLFSFITL FVFLFIGFHN WRRTYWLYLK KLRPINDTYD APFAIGCKNV  60
   61 AYEASQYPRM NATFMVLARN SDLDGVLSSM NSIERRFNRH FKYPYVFLND EPFTTEFKKA 120
  121 VKDATDSSIQ FGVLDDELWN FPKDVDKDMI DESIAEQVGV VYANFPSYHK MCRFFSRNFY 180
  181 KHPLMQQYEW YWRLEPEVTF SCDISYDPFY YMDKHNKVYG YVIAIKELAK TVPNLFRYTV 240
  241 AHQKISNLPT TDLWSFFLDK RYETRIKKLK EEQKDQGYYV LPEPPLNRID GQIYNLCHFW 300
  301 SNFEIARLDF YNSKEYNEYV DALENAGGFW TERWGDAPVH SLAVGLLLNR S

Type	Start	End	Confidence
Cytoplasmic	1	12	0.73
Transmembrane Helix	13	31	0.88
Non-Cytoplasmic	32	351	0.87