YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	alg2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQENSVHRS STKKTPIKIA FIHPDLGIGG AERLVVDAAV GLQSLGKEVV VFTSHCDKKH  60
   61 CFEEIRDGTI KVKVYGDWLP SSIFGRLSIF CSSLRQVYLT MILLTNYMHF DAIIVDQLST 120
  121 CVPFLLLASQ MILFYCHFPD KYLAKRGGIL KKLYRIPFDT VEAESVRLAD RIVVNSKFTA 180
  181 SVFKKAFPKI RKPLRIVHPC VDIEAASKPL EFQLPEKILQ RKLLISVNRF ERKKDIRLAI 240
  241 DAFSALRDLS ANRFPEYLLL VAGGYDIRVS ENRRYLKELQ EFCEQKDLSY TTVKDNWDNI 300
  301 TVAPSTNVLF LLSVPSKVRD ALISSSRILL YTPENEHFGI VPLEAMLRKV PVLAQTNGGP 360
  361 LETVIDGKNG WLRPRDAKIW GNVIYEATTS TTYDTAAMGE AGSEWVKNEF STDAMARKFE 420
  421 SEIMSGIRSI TPEKRLMRRV NGLLAVFVLF MLFWGTCIIA ATVPFAIIKL YFAQTYSSVK 480
  481 LGFMLGTCIV SVSFLTFTVY AKLTNL

Type	Start	End	Confidence
Cytoplasmic	1	82	0.91
Transmembrane Helix	83	105	0.61
Non-Cytoplasmic	106	117	0.56
Transmembrane Helix	118	138	0.76
Cytoplasmic	139	442	0.95
Transmembrane Helix	443	468	0.88
Non-Cytoplasmic	469	480	0.81
Transmembrane Helix	481	501	0.94
Cytoplasmic	502	506	0.81