YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30424122
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSINVKLLY HYVITNFFNL CFFPLTAIVA GKASRLTIDD LHHLYYSYLQ HNLITIAPLF  60
   61 AFTVFGSVLY IATRPKPVYL VEYSCYLPPT HCRSSISKVM DIFYQVRKAD PSRNGTCDDS 120
  121 SWLDFLRKIQ ERSGLGDETY GPEGLLQVPP RKTFAAAREE TEQVIIGALK NLFENTKVNP 180
  181 KDIGILVVNS SMFNPTPSLS AMVVNTFKLR SNVRSFNLGG MGCSAGVIAI DLAKDLLHVH 240
  241 KNTYALVVST ENITYNIYAG DNRSMMVSNC LFRVGGAAIL LSNKPRDRRR SKYELVHTVR 300
  301 THTGADDKSF RCVQQGDDEN GKTGVSLSKD ITDVAGRTVK KNIATLGPLI LPLSEKLLFF 360
  361 VTFMAKKLFK DKVKHYYVPD FKLAVDHFCI HAGGRAVIDV LEKNLGLAPI DVEASRSTLH 420
  421 RFGNTSSSSI WYELAYIEAK GRMKKGNKVW QIALGSGFKC NSAVWVALSN VKASTNSPWE 480
  481 HCIDRYPVKI DSDSAKSEVR VQNGRS

Type	Start	End	Confidence
Cytoplasmic	1	7	0.85
Transmembrane Helix	8	31	0.86
Non-Cytoplasmic	32	50	0.77
Transmembrane Helix	51	72	0.90
Cytoplasmic	73	215	0.82
Transmembrane Helix	216	233	0.48
Non-Cytoplasmic	234	264	0.66
Transmembrane Helix	265	282	0.36
Cytoplasmic	283	506	0.59