YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15042695
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.98
Transmembrane Helix	14	36	0.92
Cytoplasmic	37	44	0.85
Transmembrane Helix	45	65	0.93
Non-Cytoplasmic	66	104	0.95
Transmembrane Helix	105	127	0.89
Cytoplasmic	128	135	0.83
Transmembrane Helix	136	157	0.91
Non-Cytoplasmic	158	168	0.83
Transmembrane Helix	169	190	0.92
Cytoplasmic	191	200	0.92
Transmembrane Helix	201	223	0.85
Non-Cytoplasmic	224	235	0.78
Transmembrane Helix	236	256	0.95
Cytoplasmic	257	263	0.90
Transmembrane Helix	264	283	0.92
Non-Cytoplasmic	284	289	0.70
Transmembrane Helix	290	312	0.83
Cytoplasmic	313	320	0.92
Transmembrane Helix	321	345	0.81
Non-Cytoplasmic	346	367	0.89
Transmembrane Helix	368	388	0.93
Cytoplasmic	389	492	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNLATGQFD RGDISFIVVA GAMVFFMVPG LAFLYSGLSR RKSALSLIWA VAASNAVVIF  60
   61 QWYFVGYSLA FSSTATNGYI GNLRNFGLMK VEADPSPGSP LIPEILYSFF QMEFACVTAG 120
  121 ILMGGLAERG RVFPAMIFIF FWMTFVYCPL ACWAWSTHGW AFKWGVLDFA GGGPVEIGSG 180
  181 VGGLAYAWVL GRRNERELLN FRPHNVGLVG LGTFMLWFGW IGFNGGSAFG ANLRAIFAIW 240
  241 NTMIAASFGG MVWCLLDFRI ERRWSMVGFC SGTIAGLVAA TPSSGYLRPW SSVVVGVLAG 300
  301 TLCNFATKVK FLLRIDDALD LFAEHAVGGV VGLMLNAFFA ETAVIAMDDV TIGVRGGWVD 360
  361 HNWKQLYIQF TYVVATCAYS FVMTALVAKT VDLIPGLKLR SSPEGEMLGM DEVEIGEFAT 420
  421 DYIELRRDVA DCSTFGFTRG SNGYIPHAAT NETHAQDTSS NDDPHHRIDE PTAPERLEPL 480
  481 TEKNECGTVT PS