YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88598170, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEKAVLECG DRRISLPVLR GTDGTPVVDI TTLYRENNVL TYDPGFMSTA ACRSEITFID  60
   61 GNKGTLRYRG IDIENLIGTP NSFSSIVYLL LKGTLPSETE HEEFVRILGA EYDVPEQVMN 120
  121 VIRSFPRDSH PMAILIASFS ALAANYHASR IDPLTGAIIA IAKVPGIVAS IYRHTANLDF 180
  181 IQADANLEYT HHFIRMMFGD MDDAHRDIMH KALDAIFIMH ADHEQNASTS TVRMTGSSGA 240
  241 GLFACLCAGV ATLWGPAHGG ANEAVIKMLA EIGSPENVSS FIDKVKNNKG KSRLMGFGHR 300
  301 VYKSYDPRAR VLRTICKDVL DSLGRDENLL AVAEELESQA LQDEYFIERK LYPNVDFYSG 360
  361 IVLRAMGVPV DMYTAFFALA RTSGWASQWY EMIQSDEGKR ISRPRQLYTG K

Type	Start	End	Confidence
Cytoplasmic	1	128	0.52
Transmembrane Helix	129	148	0.39
Non-Cytoplasmic	149	411	0.58