YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6503070
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLLSCVRST LRKCGNGNIG MSRLLYANNF ERKLISSGGN ESYHAHFNKR SYTSFYMPAE  60
   61 TGGMITSARM KMIGSEGFMN STYGSITKRN SRLIHFDSKS SCVTTPVNPE QIVPISEIEN 120
  121 ITTEMVKMPG IPRWMKPFIS TVAPCDAAEP WQLGFQDAAS PIMQGIIDLH HDIFFFVVQI 180
  181 AVFVVWMLAR ALWHFRYKAS PIPQRIVHGT AIEIIWTIFP SIILMFIAIP SFALLYSMDD 240
  241 VVVDPAITIK AIGHQWYWSY EYSDYNKSDE QALAFDSYMI PEDDLELGQL RLLEVDNRVV 300
  301 VPAKTHLRVL ITSADVLHSW AVPSLGVKCD AVPGRLNQIS TFIQREGVYY GQCSEICGTN 360
  361 HAFMPIVIEA VSTKDYGSWV S

Type	Start	End	Confidence
Cytoplasmic	1	133	0.60
Transmembrane Helix	134	148	0.33
Non-Cytoplasmic	149	172	0.64
Transmembrane Helix	173	193	0.93
Cytoplasmic	194	213	0.62
Transmembrane Helix	214	234	0.87
Non-Cytoplasmic	235	381	0.74