YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5802893
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	87	0.95
Transmembrane Helix	88	108	0.77
Non-Cytoplasmic	109	127	0.77
Transmembrane Helix	128	148	0.91
Cytoplasmic	149	157	0.66
Transmembrane Helix	158	176	0.83
Non-Cytoplasmic	177	214	0.67
Transmembrane Helix	215	237	0.87
Cytoplasmic	238	284	0.79
Transmembrane Helix	285	304	0.72
Non-Cytoplasmic	305	324	0.85
Transmembrane Helix	325	346	0.94
Cytoplasmic	347	462	0.98
Transmembrane Helix	463	484	0.94
Non-Cytoplasmic	485	491	0.88
Transmembrane Helix	492	511	0.89
Cytoplasmic	512	525	0.75
Transmembrane Helix	526	546	0.87
Non-Cytoplasmic	547	588	0.70
Transmembrane Helix	589	612	0.89
Cytoplasmic	613	622	0.64
Transmembrane Helix	623	642	0.63
Non-Cytoplasmic	643	663	0.79
Transmembrane Helix	664	686	0.81
Cytoplasmic	687	1132	0.92
Transmembrane Helix	1133	1153	0.93
Non-Cytoplasmic	1154	1171	0.84
Transmembrane Helix	1172	1192	0.76
Cytoplasmic	1193	1201	0.67
Transmembrane Helix	1202	1222	0.90
Non-Cytoplasmic	1223	1268	0.76
Transmembrane Helix	1269	1288	0.92
Cytoplasmic	1289	1378	0.77
Transmembrane Helix	1379	1401	0.95
Non-Cytoplasmic	1402	1456	0.84
Transmembrane Helix	1457	1477	0.89
Cytoplasmic	1478	1488	0.80
Transmembrane Helix	1489	1512	0.82
Non-Cytoplasmic	1513	1581	0.58
Transmembrane Helix	1582	1605	0.84
Cytoplasmic	1606	1669	0.66
Transmembrane Helix	1670	1694	0.89
Non-Cytoplasmic	1695	2146	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARFGDDLPT RYGGGGPAGA GRGSSRQGGP QAGQRMYKQS MAQRARTMAL YNPIPVKQNC  60
   61 FTVNRSLFIF SEDNVIRKYA KRITEWPPFE YMILATIIAN CIVLALEQHL PDGDKTPMSE 120
  121 RLDDTEPYFI GIFCFEAGIK IIALGFVFHK GSYLRNGWNV MDFVVVLTGI LATAGTDFDL 180
  181 RTLRAVRVLR PLKLVSGIPS LQVVLKSIMK AMVPLLQIGL LLFFAIVMFA IIGLEFYMGK 240
  241 FHKTCFSNKT GEEVGDFPCG EEPPARQCES GTTCREYWQG PNYGITNFDN ILFAVLTVFQ 300
  301 CITMEGWTDI LYNTNDAAGN TWNWLYFIPL IIIGSFFMLN LVLGVLSGEF AKERERVENR 360
  361 RAFLKLRRQQ QIERELNGYL EWIFKAEEVM LAEEDKNAEE KSPLDMLKRA AIKKSKNDLI 420
  421 HAEEGSPFAR ASLKSGKNES SSYFRRKEKM FRFFIRRMVK AQSFYWIVLC VVALNTLCVA 480
  481 MVHYDQPEKL TTALYFAEFV FLGLFLTEMS LKMYGLGPRN YFHSSFNYFD FGVIVGSIFE 540
  541 VIWAAVKPGT SFGISVLRAL RLLRIFKVTK YWNSLRNLVV SLLNSMKSII SLLFLLFLFI 600
  601 VVFALLGMQL FGGQFNFRDE TPTTNFDTFP AAILTVFQIL TGEDWNAVMY HGIESQGGVH 660
  661 SGMFSSIYFI VLTLFGNYTL LNVFLAIAVD NLANAQELTK DEEEMEEATN QKLALQKAKE 720
  721 VAEVSPMSAA NISIAAKQQN SSKSKSVWEQ RTSQIRMHNF RASCEALYNE LDPEERVRYA 780
  781 TTLHIRPDMK THLDRPLVVE PRGEGRNNIS KLSPVDVQEV EQTKVSSTDG AEAPRKHHRH 840
  841 RDKEKLGEQE KGDVTKDENG ESGINNKEER HRQHRSRSKE VEGGSKEGKS DRSRGQEGGK 900
  901 RHHRRGSVEE GVEKEHRRHR THRHSAERQG KEGNGTINGA RSERRTRHRG GSRSGNREGE 960
  961 PGSKGENGEE PHRRHRFRSR ALSTYDSVEK ENREKEGETA EKEHQNHQPK ENQCEIEASG1020
 1021 SVSIPVHTLP STYLQKVPEQ PEDADNQKNV TRMIQPPLDK TTTVNIPVTI TAPPGETTVI1080
 1081 PMNNVEFESK TEEKKDVDDL TKNGPKPILP YSSMFILSPT NPIRRLFHYI VNLRYFEMVI1140
 1141 LIVIALSSIA LAAEDPVQAE SPRNDALKYL DYIFTGVFTF EMVIKMIDLG LLLHPGSYFR1200
 1201 DLWNILDFIV VSGALVAFAF SGTKGKDINT IKSLRVLRVL RPLKTIKRLP KLKAVFDCVV1260
 1261 NSLKNVLNIL IVYMLFMFIF AVIAVQLFKG RFFYCTDESK ELEKDCRGQY LDYEKNEVEA1320
 1321 QPREWKKYEF HYDNVLWALL TLFTVSTGEG WPTVLKHSVD ATYEEQGPSP GYRMEMSIFY1380
 1381 VVYFVVFPFF FVNIFVALII ITFQEQGDKV MSECSLEKNE RACIDFAISA KPLTRYMPQN1440
 1441 KQSFQYKMWK FVVSPPFEYF IMVMIALNTI VLMMKFYDAP EAYEEMLKCL NIVFTSMFSM1500
 1501 ECVLKIIAFG VLNYFRDAWN VFDFVTVLGS ITDILVTEIA DTDNFINLSF LRLFRAARLI1560
 1561 KLLRQGYTIR ILLWTFVQSF KALPYVCLLI AMLFFIYAII GMQVFGNIAL NDETSINRHN1620
 1621 NFRTFLQALM LLFRSATGEA WHEIMLSCLS NRACDPLSGL TKNECGSDFA YFYFVSFIFL1680
 1681 CSFLMLNLFV AVIMDNFEYL TRDSSILGPH HLDEFVRVWA EYDPAACCRI HYKDMYNLLR1740
 1741 VIAPPLGLGK KCPHRVAYKR LVRMNMPISP EDLTVHFTST LMALIRTALE IKLASGGVKQ1800
 1801 HQCDAELRKE ISLVWPNLSQ KTLDLLVPPH KPDEMTVGKV YAALMIFDFY KQNKSSREQV1860
 1861 HQPPGGLCQP GPVSLFHPLK ATLEQTQPSA FSSAKAFLRQ KSSASLNNGG TLPAPEGGIK1920
 1921 ESSSWGTQRT QDVFYETRTP AFERGHSEEI PIERVVEMRE ISPTLANGEH QPGLESQGRA1980
 1981 ASMPRLAAET QRSKARSPGS YLAPIPDTSP MKRSISTLTP QRPHPMHLYE YSLERVPTDQ2040
 2041 VHHHHHHRCH RRKEKKQKSL DRTTHQLADG EAVAQSGESS SKDKKQERGR SQERKQHSSS2100
 2101 SSEKQRFYSC DRYGSRDRSQ PKSADQSRPT SPNGGPEQGP HRQWFG