YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5579408
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	115	0.90
Transmembrane Helix	116	135	0.90
Non-Cytoplasmic	136	158	0.85
Transmembrane Helix	159	178	0.95
Cytoplasmic	179	189	0.72
Transmembrane Helix	190	210	0.87
Non-Cytoplasmic	211	216	0.77
Transmembrane Helix	217	236	0.95
Cytoplasmic	237	297	0.87
Transmembrane Helix	298	316	0.67
Non-Cytoplasmic	317	345	0.63
Transmembrane Helix	346	370	0.77
Cytoplasmic	371	415	0.65
Transmembrane Helix	416	434	0.83
Non-Cytoplasmic	435	439	0.41
Transmembrane Helix	440	462	0.82
Cytoplasmic	463	469	0.47
Transmembrane Helix	470	493	0.87
Non-Cytoplasmic	494	503	0.49

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAILDSGGVA VPPTENGVAD LDRLHRRKSS SDSSNGLLSD TSPSDDVGAA AAERDRVDSA  60
   61 AEEEAQGTAN LAGGDAETRE SAGGDVRFTY RPSVPAHRRT RESPLSSDAI FKQSHAGLFN 120
  121 LCVVVLVAVN SRLIIENLMK YGWLIRTDFW FSSTSLRDWP LFMCCLSLSV FPLAAFTVEK 180
  181 MVLQKFISEP VAIILHVIIT MTEVLYPVYV TLRCDSAFLS GVTLMLLTCI VWLKLVSYAH 240
  241 TSYDIRTLAN SADKVDPEIS YYVSLKSLAY FMVAPTLCYQ PSYPRSPCIR KGWVARQLAK 300
  301 LVIFTGLMGF IIEQYINPIV RNSKHPLKGD LLYAIERVLK LSVPNLYVWL CMFYCFFHLW 360
  361 LNILAELLCF GDREFYKDWW NAKSVGDYWR MWNMPVHKWM VRHVYFPCLR IKIPKVPAII 420
  421 IAFLVSAVFH ELCIAVPCRL FNLWAFMGIM FQVPLVFITN FLQERFGSMV GNMIFGSASC 480
  481 IFGQPMCGLL YYHDLMNRKG SMS