YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15488440
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARSDSGRGP RLREIPFRLL VPNLITVLAI CAGLSGVRLA IEGRFELAVG MVLLAAFLDG  60
   61 VDGRVARMMK ATSKFGEQMD SLADIVNFGV APALVVYIYL LDQARSIGWI GALIYVIAAG 120
  121 LRLARFNVMI ERPVKAPWQS EFFVGVPAPM GAMLVLLPVY LGFLGVEPDK PFAYVAAAYT 180
  181 VLIGYLLISR LPVWSGKSST RIRRDLVLPM ILVVVLYVAM LMSFTWEVLV LTVAAYLVFI 240
  241 PISARLWHRR YGTLTIEEDA HDDANGGNGL DRGI

Type	Start	End	Confidence
Cytoplasmic	1	18	0.94
Transmembrane Helix	19	40	0.91
Non-Cytoplasmic	41	46	0.72
Transmembrane Helix	47	66	0.89
Cytoplasmic	67	81	0.91
Transmembrane Helix	82	101	0.94
Non-Cytoplasmic	102	106	0.89
Transmembrane Helix	107	126	0.94
Cytoplasmic	127	141	0.91
Transmembrane Helix	142	164	0.92
Non-Cytoplasmic	165	171	0.89
Transmembrane Helix	172	194	0.89
Cytoplasmic	195	205	0.84
Transmembrane Helix	206	224	0.89
Non-Cytoplasmic	225	227	0.71
Transmembrane Helix	228	247	0.87
Cytoplasmic	248	274	0.88