YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56552756, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDSDEISTP VQHYVIRQMG WLRASVLGAN DGILSTSSLM IGVASAHGSS GNILLAGMSG  60
   61 LIAGALSMAA GEYVSVSSQH DMEQADVARE HAELKANPHA EKHELAEIYV ERGLDRELAL 120
  121 QVAEQLMAHN ALEAHLRDEL GLTDSLIARP VQAALASAIS FSGGAIVPFL TALFSPPEII 180
  181 NITISLISIL CLAVLGMVGA HLGGANVPKA ALRVTFCGAL AMIGTAAIGS FFGTQV

Type	Start	End	Confidence
Cytoplasmic	1	25	0.85
Transmembrane Helix	26	46	0.85
Non-Cytoplasmic	47	52	0.73
Transmembrane Helix	53	74	0.89
Cytoplasmic	75	152	0.93
Transmembrane Helix	153	174	0.90
Non-Cytoplasmic	175	181	0.73
Transmembrane Helix	182	203	0.93
Cytoplasmic	204	211	0.79
Transmembrane Helix	212	233	0.92
Non-Cytoplasmic	234	236	0.82