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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|4741879
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEPRMPRPA ISPTRDKSHS PYRESPSRRL RDVETGYNPP QNPPYPPQRN GTEPYPPSPS  60
   61 SRTADWEPIM SNPNPMSQSD LGRKKSLIRP ERNRIDRDHP NYYYRKHAAN MEVLPSTTGN 120
  121 DPVVEDLAEH RTVSSGSTQQ DTSIEEEVVG NPQKSRMPGK LEPVGKKKAP RKLVRKDTRN 180
  181 LTEEEKRRQK ELDKIKPPSI WNIYCAVVTF WAPDCLLQCF GMPARAQRRA WKEKVGLISI 240
  241 ILLIAAFVGF LTFGFTQAVC AAPGLRLKIN HVDRSYMIFH GGAYNLDGSM HPAARGIPLD 300
  301 ANVLYDLPHK YGGQDGSFMF QKVNGACKGL ITLAEGSDVP TNSDGDLAWY FPCTAFNQDG 360
  361 SSEVNLTSPY YLGYACHTTA KARNTFYSLK KAGDVYFTWD DIKNKSRNLA VYSGSVVDLD 420
  421 LLKWFNKSQV AWPQQFDDLR ENGRVRGMDL THVLQSATDK QVGRCLTQIA KVGSIDTESV 480
  481 GCIASKVVLY VSLVFILAIV AAKFFLALAF QWFLARRFAA AKTSQTSDPK KRAKQIEDWT 540
  541 DDIYKPAPKI TDPASTVTGS DGRTSKRGSM FLPQTSRFTS PYAVDRRSSR PPPTTMTSQS 600
  601 SNAKLLPGGN PYKSGFNSSQ NTLDLHSRMS VGASRSSLLL SGQETRYSAV MDNLDPNGPV 660
  661 GFIHENVVPQ PPPEWQPFGY PLAHVICLVT AYSEGEDGIR TTLDSIATTD YPNSHKAILV 720
  721 VCDGMIKGKG EAQSTPDIVL GMMGDFVIAP EDVQAFSYVA VSSGAKRHNM AKVYAGFYDY 780
  781 GPKSRIDPTK QQRVPMMVVV KCGTPDEATK SKPGNRGKRD SQIILMSFLQ KVMFDERMTE 840
  841 LEYEMFNGLW KVTGMSPDFY EMVLMVDADT KVFPDSLTHM VSAMVKDPEI MGLCGETKIA 900
  901 NKNASWVSRI QVFEYFISHH LSKSFESVFG GVTCLPGCFC MYRIKSPKGG QNYWVPILAN 960
  961 PDIVEHYSEN VVDTLHKKNL LLLGEDRYLS TLMLKTFPKR KQVFVPQAVC KTTVPDEFKV1020
 1021 LLSQRRRWIN STVHNLMELV LVRDLCGTFC FSMQFVVFIE LIGTLVLPAA ISFTFYLIIL1080
 1081 SIVKKPVPVI PLVLLALILG LPAILIVLTA HRWSYILWMG IYLLSLPIWN FVLPAYAFWK1140
 1141 FDDFSWGETR KTAGEKTKKA GLEYEGEFDS SKITMKRWGD FERGKLDQRS SVCGILVETN1200
 1201 LCHLFRTASS GERKCLEPAT SYASTERLRF YAWVRTLP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle