YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30387023
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	64	0.76
Transmembrane Helix	65	88	0.86
Non-Cytoplasmic	89	99	0.69
Transmembrane Helix	100	119	0.72
Cytoplasmic	120	128	0.44
Transmembrane Helix	129	151	0.83
Non-Cytoplasmic	152	153	0.39
Transmembrane Helix	154	176	0.75
Cytoplasmic	177	182	0.39
Transmembrane Helix	183	197	0.69
Non-Cytoplasmic	198	198	0.04
Transmembrane Helix	199	213	0.63
Cytoplasmic	214	220	0.53
Transmembrane Helix	221	245	0.83
Non-Cytoplasmic	246	313	0.62
Transmembrane Helix	314	331	0.94
Cytoplasmic	332	351	0.79
Transmembrane Helix	352	371	0.95
Non-Cytoplasmic	372	377	0.75
Transmembrane Helix	378	400	0.92
Cytoplasmic	401	407	0.76
Transmembrane Helix	408	431	0.88
Non-Cytoplasmic	432	439	0.78
Transmembrane Helix	440	461	0.91
Cytoplasmic	462	530	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDIEGEPGS SMHGVTGREP VLAFSVASPM VPTDTTAKFS VPVDTEHKAK IFKFYSFSKP  60
   61 HGLTFQLSWI SFFTCFVSTF AAAPLVPIIR DNLNLTKMDV GNAGVASVSG SILSRLVMGA 120
  121 VCDMLGPRYG CAFLIMLSAP TVFCMSFVSS AGGYVAVRFM IGFSLATFVS CQYWMSTMFN 180
  181 SQIIGLVNGT AAGWGNMGGG ATQLIMPIVY DIIRRAGATP FTAWRIAFFI PGWLHIVMGI 240
  241 LVLTLGQDLP DGNRGDLQKK GDVSKDKFSN ILWYAATNYR TWIFVLLYGY SMGVELSTDN 300
  301 VIAEYFFDRF DLKLHTAGII AATFGMANLL ARPFGGFSSD YAAKRFGMRG RLWVLWILQT 360
  361 LGGVFCVLLG RSNPLPIAVT FMILFSIGAQ AACGATFGII PFISRRSLGI ISGMTGAGGN 420
  421 FGSGLTQLLF FTSSKYSTAT GLTYMGLMII GCTLPVTFCH FPQWGSMFFP PTKDPVKGSE 480
  481 EHYYAAEYTE AERQKGMHQN SLKFAENCRS ERGKRVGSAP TPPNLTPNRV