YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22761388
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWGLVSALAA TLCFSLQNIF SKKVLRDSRI HHLRLLNILG CHAVFFMIPT WVLVDLSAFL  60
   61 VSSDLTYVYQ WPWTLLLLAV SGFCNFAQNV IAFSILNLVS PLSYSVANAT KRIMVITVSL 120
  121 IMLRNPVTST IVLGMMTAIL GVFLYNKTKY DANQQARKHL LPVTTADLSS KERHRSPLEK 180
  181 PHNGLLFPQH GDYQYGRNNI LTDHFQYSRQ SYPNSYSLNR YDV

Type	Start	End	Confidence
Cytoplasmic	1	34	0.62
Transmembrane Helix	35	54	0.91
Non-Cytoplasmic	55	72	0.79
Transmembrane Helix	73	99	0.79
Cytoplasmic	100	120	0.67
Transmembrane Helix	121	145	0.79
Non-Cytoplasmic	146	223	0.72