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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|15451577
Protein type: Transmembrane
Type Confidence: 0.71
Topology Confidence: 0.44
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLPPPRLL RSFAVSLLRF LIYYCLPPHF PPSKLVYQLT RQWIPEASER GREEGWERGR  60
   61 RGGGGGWRWR AAGGSTGRRR GGSCRRRSFS TISADQTPRK KTESNRRWKR KNRSRFVLNV 120
  121 PKEDLESFER ILFLLEQAHW FYEDNSVEHN PSLKSLSFKD FTTLMFNSCA ALRPYRAHLD 180
  181 DIYKDFTHYK FRVPVCGAII LDDTYEKCLL VKGWKSSASW SFPRGKRSKD EEDHTCAVRE 240
  241 VLEETGCDVS KLLKLEDYIE VSMWQQRVRL YIITGVKGDT VFAPQTKKEI SEISWHNIDE 300
  301 LLPAGDDAIS RGVNGMKLYM VAPFLQGLKA WIATHRHPQY QKSDTSARGT VWKAKNSSTG 360
  361 AAPVENPVIT RTGSDPQTLD SRPEASGIWS RADAMAALVR PAVLPVCAMT GGGGNDKRSP 420
  421 PQQRSWWGGN KQRLPHQPRR QPGGNGGRGG GGGALDQVLG VLRRDGEFLQ AAAGAPLRDI 480
  481 FWLRFLEKKK QQRRRKQPKP KPKPPEQQQQ QEEAAAAIQA PSFPPPSYQP GLSCLDLMTA 540
  541 DFEALKLYIG YSKHAIEQQF LKGKRQPQHQ QTPKPKLQQQ QQQQKKKQQQ QEQQNQTLQP 600
  601 PAFPPPSYPP GLSCMELMMA DIEALKLYIN YYVAILTTPL PQHYDPEILS RYFTSRPHIL 660
  661 AFRTIQIIFA FVSAAVKMQI SKRTNLITDA TYSCNSTGSK GFNASQYMVG QLLKETFLDL 720
  721 GPTFVKVGQS LSTRPDITGS EISEALAELH EKVPPFPRKD AMKIIEGEFE LPVSHIFSYI 780
  781 SDEPVAAASF GQVYQGRTVD GALVAIKVQR PNLLPSVLRD IYILRLGLSF VRKVAKRKSN 840
  841 IALYADELGK GLVGELDYNI EAANATKFLE YHSRYSFMLV PKVLKQLTRR RVLTMEWVSG 900
  901 ENPTDLLSLS KGISSEIAES SEKQKIEATA RLLDLVNKGV EASLVQLLET GLLHADPHPG 960
  961 NLRYTPEGRV GFLDFGLLCM MEKKHQHAML ASIVHIVNGD WASLVYDLTA MDVVPPRTNL1020
 1021 RRVTMDLEDA LGEVTFEDGI PDIKFSRVLG KIWSVAFKYH FRMPPYYTLV LRSLASLEGL1080
 1081 AIAADGTFKT FQAAYPYVVR KLLSDNSVAT RRLLHQGNGI DDNRVLTPII NTQAIFNKRK1140
 1141 EFQWNKITVF LKLASARGNF RYNTGVLPER KGLDVAKLVE ISDASSSLHL NRATPERALH1200
 1201 TANLCLRLLL SKESIVIRRL VMTANAKSLA RDLISKDASI YRVLLSRVLA DVIFQWMVKA1260
 1261 TGFKRAGQLE PHPRVTAGKN DEDLGLSKEA PALVTFQTAV RDRRLKVIFS KFVRDIREDP1320
 1321 ILMVRVSWNM FAISVVSAAI GVHRFIVVLS EEFLSTLPPP VPPPRLVQIQ SI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle