YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15419342
Protein type:	Globular with Signal Peptide
Type Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALIEAFLLQ GSPTGAILGA LLLFLVIYLF SSSSSSQDKE KYPPGPKPLP LLGNLHILDL  60
   61 KKTYLSLLEL SKKYGPIYTV YLGPKKVVIL SGYKIVKEAL VNLSEEFGDR DISPIFHDFN 120
  121 RGYGIAFSNG ENWREMRRFA LSTLRDFGMG RKRSEELIIE EIKYVKEEFE KFGGNPFETK 180
  181 LPLALAISNI IASIVFSVRF EYSNTKLHRM VGRAYENMKL TGSPSVQIYN MFPWLRPIVA 240
  241 NRNQIVKNLR DTFKQNEELI NGVMKTLDPF NPRGIVDSFL IRQQKDEESG KTDSLYNSNN 300
  301 LYCTVNNLFG AGTDTTVTTL RWGLLLMAKY PEIQAKVQDE IERVIGGRQP VVEDRKNLPY 360
  361 TDAVIHEIQR FADISPIGAP RQTTCDVHLN GYFIKKGTPV FPLLVSVLRD EXEWETPDSF 420
  421 NPKHFLNKQG QFVKKDAFMP FGAGRRVCIG ESLARMELFL FFTSLLQYFR FTPPPGVSED 480
  481 DLDLTPVVGF TLNPKPHQLC AVKRS

Type	Start	End	Confidence
Signal Peptide	1	36	0.63
N-region	1	27
H-region	28	33
C-region	34	36
Cleavage Site	36	37
Non-Cytoplasmic	37	505	0.96