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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|6164595
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLCNLRSLL VAVIVLSNCI AWTASRHHYT HNVSGHRSRH RRQGKGLYLS SSYVIPGGEG  60
   61 TGWGDWGDST PCSRTCGGGV ASQKRICLKF GPDGQPQCTG GDTKYFSCET QDCPPGSTDF 120
  121 RAEQCSKYDD VEYRNIKYKW KPYTRGPNPC ELNCMPHGER FYYRHQLKVI DGTRCNDDSF 180
  181 DVCVNGTCQP VGCDMMLGSN AREDKCRRCR GNGKNCYTTN GVLDTQDLIK GYNDMLLIPE 240
  241 GATTIVIMEV KPSNNYLALR AKNGTYYLNG DYHIDFPRSM MIAGALWFYE RSQQGFAAPD 300
  301 KLRCLGPTTE PLYLSLLLQS VNVGIEYEYS LPTERAPRPT QNYTWVHEHF TECSATCGGG 360
  361 FQTRNVTCRT QMDLELVDDT LCDEGLKPVT NQTCNNNVCP PQWVTGEWGS CSHRCGSDGT 420
  421 QSREIQCEKI IVNGFRSIVS DKECFDLLGP KPEKFRKCNV NITCPTWFTG PWKPCDTLYG 480
  481 EGKQTRQVVC YQKNGRRIDV LDDSECTDER PESEQKCMIH SEERTDWVAS EWSGCDNCFS 540
  541 TMRTRIAKCT TYDRKLVDDS FCAHHPLPVL QEPCDAATLP PCDVQWYATQ WSKCSSECGD 600
  601 GTQTRRVFCG IYVNNTVVEV EESKCAGLTK YSEKRNCTVP KEKCPSLWYT APWSKCSKEC 660
  661 GGGEQSRRVL CLRGDQFVSD CSGLNVPDSV QVCNTGPCNK DEIITLDSHS TPIMDEEDCD 720
  721 YEEYYPEIGL DFALAFSGRT SPDLMLSDTP SADIDSGTET GSIDTDYITV SDDFGISDDG 780
  781 SGSGFSSFST DFTSDTTDDY STDSTDSTVT ESSLSPSSVS DLKHTPRSEN GTVKPKAAIA 840
  841 TKDTTTSETE TSVTDLDYST IEDTDYTVTD SSTSSDETTG TDDKSSTTTD FSSSDSTITE 900
  901 TYESGLTDSS TLKETSETAT DTPGLSTTSG DETSASDKSK STDISETTEK LDSTSYSATT 960
  961 ESSTDESTVE FESSLYTEDT SASTSSELSS RDITDESSTP YTKDIEGTTA SGSTESTFTD1020
 1021 ETTMSKVTEE SSVAEEETTK TTITEEVSGT SESASINSDK TTMTTLSEDT GKTSVSEEIT1080
 1081 TEMTVTEETS ETSPTEGTSD KTTMSTVSEE TESSSVTEET TTETTVVENA TDISSTEVTA1140
 1141 SDKTTMTTMS EESEKTTEEA TTEITVTKEV TESSSTETAT SDKTISTLSE ETGKTSVAEE1200
 1201 STTEKVTETT VTTMPEETGK TITSEEITIK TTVTEEPTDV GSSEAITSDK TTVSTASEET1260
 1261 GKYSVSEEET VKTTVAEAST EPSSTEAITS DKTKMSTISE ETGKTSVSEE ITVKTTVTEE1320
 1321 STEPSSTEAI TSEKTSVIST SEETGKTSVS EEVTVKTTVT DEATEITSTV SIETKETSVS1380
 1381 GSTEELSTQA SSKIESPTTE SGITSHTTES EESTVSTTEK GEVTSETTEL TKSIVSTETM1440
 1441 LSTTEKEETV MSTTELISTE EFSSTTESTE ETGSTTEIST EYTESTTASQ IIEASTTVAP1500
 1501 ETNETGTPAS ALPVEGLSTS TEGITTQESE VTVITTEKSK PGTTLRSPWS TPTHRRRCKP1560
 1561 RKRTCSKTMF GCCPDRKTPA KGPYDEGCPR PKTCHESKFG CCHDGLSPAL GPFEEGCPTI1620
 1621 SCTDTLFGCC LSDNKTAAEG NDQEGCPPPP PACKSTVFGC CADDETEARG PDKEGCPELT1680
 1681 TSTELPSTTE SEAQTEPEST SSSEATTTNI LSSSIAYENC TTSEFGCCFD QETPATGPQG1740
 1741 EGCPCNSTEF GCCPDGVSPA RGNDFEGCVI TCNLSSYGCC PDGETPAHGP DDLGCCLLSA1800
 1801 YGCCPDNRKP AVGPHLEGCG CQYSSFGCCP DNATVARGPN FQGCGCQYTE HGCCPDRHTE1860
 1861 AAGPDYDGCG CHTYQFGCCP DGVTIAKGQN HQGCDCRDSQ YGCCGDGKTP ATGPEREGCD1920
 1921 CATSEYGCCP DGLTEAKGHK FYGCSDLPEN KQAACGLPHD RGTCRNYSVY WYYDLEYGGC1980
 1981 SRFWYGGCEG NGNKFATKEE CEDVCVQPAP KDACNLPKVK GACLGYNIRW YYDAEQEQCS2040
 2041 QFIYGGCLGN ANNYASLQLC QEQCQPERSE DQCRLPIDRG SCSGNFGRWG FNSETRRCEQ2100
 2101 FMWGGCEGNT NRFSSEIACI QRCDPPGKPK LPDLCTLPAA IGDCADYRER WYYDTREKSC2160
 2161 QRFYYGGCAG NGNNFATQAE CEGRCSEAKI TTTVRPTEAH PLTEMCFMEK DPGPCTDTET2220
 2221 RWVYDYKLGK CVTFEYGGCG GNRNNFPTEE YCQYYCGTAQ DICQLPMRSG PCTESLMRWF2280
 2281 YDPSSDSCSQ FTYGGCDGND NRFETRDDCE SRCRTGSAQT TTTPTTSVTV AVDSRIAEQL2340
 2341 PTECHISPSE EPCQRSGQVW YLDQRLGECV SHDNLDSGDS CRHTGVFPTQ EACERTCGAF2400
 2401 RNINVCRYDL DPGPCRTYEA KYFFDKASRS CREFAYGGCH GGPNRFSTID ECQEVCRSEM2460
 2461 DPCKQVVEPG DCTSRYVMWY YDNVRDTCLQ FIYGGCHGNE NRFETLEDCE RKCRQRPESV2520
 2521 STTTAFIATT TTTTTLAPTL PPTEAEPIAE ECRTPESLVP CGANITTYYY DQESRSCVQG2580
 2581 DIGGCRYANS FRTEEECERR CGAFRDINVC EARLDPGPCR SSIPKFYWEP ASGSCLQYSY2640
 2641 GGCGGGANRF STIEECEEIC GNTGPDVVGP DCGPYEEECL QLVCPYGISR DPTPEGCTRC2700
 2701 ACVEAPVDCG PMRVECEQMR CTYGMARTQD LNGCEKCSCL PDPCVRQRCP LGESCVAIAK2760
 2761 RDPVTNDAQF YAVCKPVNEV LPDCDRFNDE CSRLRCEYGV QRTRTVDGCE RCSCVQVEID2820
 2821 CEPLKLECER LKCQYLVERQ VGADGCERCR CSEHPCKNKE CGPGDRCVPT AYLDPITQES2880
 2881 RFSSECRPVN KTGYCPVEQA STTEYPCPNE CVDDADCRGV GKCCARGCGR ACAVPDAPTS2940
 2941 AAPHTTTHAP DLPQSPQVSQ ETEPEVAAEE GGKATLRCIF HGNPPPKITW RRGEITIDGD3000
 3001 RDRYRLLSDG SLEIVSVYRN DSGVYICVAE NDLGTARQEI YLKVKVPVHT KLAASSSLLT3060
 3061 AGSELVLECE VDGYPEPDVY WTKDGRRIIP NDNIRISGSS VSHLTVARVS LSDAGMYECH3120
 3121 ARNNYSSHYS YLQIAVQPLT IPAKCTDSPF FANCPLIVRS KFCQHKYYSK FCCKSCLEAG3180
 3181 QLSAHEVEMQ ADQPLVRK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle