YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4757572
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.89
Transmembrane Helix	31	55	0.87
Non-Cytoplasmic	56	83	0.80
Transmembrane Helix	84	105	0.91
Cytoplasmic	106	113	0.73
Transmembrane Helix	114	134	0.93
Non-Cytoplasmic	135	139	0.57
Transmembrane Helix	140	160	0.89
Cytoplasmic	161	170	0.68
Transmembrane Helix	171	193	0.90
Non-Cytoplasmic	194	212	0.75
Transmembrane Helix	213	234	0.91
Cytoplasmic	235	258	0.61
Transmembrane Helix	259	282	0.88
Non-Cytoplasmic	283	298	0.53
Transmembrane Helix	299	320	0.79
Cytoplasmic	321	327	0.41
Transmembrane Helix	328	346	0.92
Non-Cytoplasmic	347	355	0.44

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPATDPPNQF SAKRLKPAPD LGKCTPPRRG LWLLTSIVIL MLVMAASLML GAKAIPFSVV  60
   61 WQSLLGEHSN ADSILILESR LPRTLIGVLA GAALGLSGAV IQALTRNPLA DPGILGVNAG 120
  121 ASFGVVIGIT IFGVHAIHGY MLSAFIGAMI TTLVVYWVGT QGGGRVNPLR LTLSGVAIGA 180
  181 VLLGISTGIS LTHPQVYDRV RFWQAGSLDI RDMSVVAAVA PAILLGSVIA LLLARPLNAM 240
  241 HMGEDLAAAI GARIAQTQFW AVVTVTLLCG AATAAVGPIA FVGLMVPHMA RWIVGPNQCW 300
  301 ILPFTLVMTP ILLLVSDIVG RFLVPGELRV SIVTAFIGAP LLIWLVRRNK RMTAL