YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|228821264, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDVQKLSPD LFQQANQNNV DNEVIARPSL TFWQDVRRRL FQHKGAMIGF VLLSLIILLA  60
   61 IFGPMVSKHS YKEQDLGRAK MPPKIPVIEN VHWLPFDGTD QYGVDQYEKR DIKEYFWFGT 120
  121 DDLGRDLWTR TWEGTRVSLY IALLAAAIDL VIGVAYGGIS AFYGGRVDNI MQRIMEIING 180
  181 IPYLIIVILM VIIMGSGIWS ITLAMAITGW IGMSRIVRGQ ILKLKNQEYV LASRTLGATN 240
  241 TQLIVKHLIP NVMGPIIVMT MFTIPSAVFG EAFLSFIGLG IQPPFASLGS LVNDGYKSIQ 300
  301 TYPHMMFIPA VVISILILAF NLMADGLRDA LDPKMRK

Type	Start	End	Confidence
Cytoplasmic	1	44	0.67
Transmembrane Helix	45	66	0.88
Non-Cytoplasmic	67	137	0.68
Transmembrane Helix	138	163	0.86
Cytoplasmic	164	176	0.56
Transmembrane Helix	177	196	0.80
Non-Cytoplasmic	197	197	0.30
Transmembrane Helix	198	217	0.67
Cytoplasmic	218	255	0.67
Transmembrane Helix	256	281	0.78
Non-Cytoplasmic	282	304	0.75
Transmembrane Helix	305	324	0.94
Cytoplasmic	325	337	0.83