YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29466437
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFPQPHSLP EATANGGRML VYGLGLLIMI PACAAGPHEK RLLHALLDNY NSLERPVVNE  60
   61 SDPLQLSFGL TLMQIIDVDE KNQLLITNIW LKLEWNDMNL RWNSSEFGGV RDLRIPPHRL 120
  121 WKPDVLMYNS ADEGFDGTYA TNVVVRNNGS CLYVPPGIFK STCKIDITWF PFDDQRCEMK 180
  181 FGSWTYDGFQ LDLQLQDEAG GDISSFITNG EWDLLGVPGK RNEIYYNCCP EPYIDITFAI 240
  241 LIRRKTLYYF FNLIVPCVLI ASMALLGFTL PPDSGEKLSL GVTILLSLTV FLNMVAETMP 300
  301 ATSDAVPLLG KYFNCIMFMV ASSVVSTILV LNYHHRNPDT HEMSEWIRVI FLYWLPCILR 360
  361 MQRPGQVGYE CPPPPSSSSS SASGEKKQQI QNVELKERSS KSLLANVLDI DDDFRCNHRC 420
  421 ASATLPHQPT YYRTMYRQGD DGSVGPVGPA GPVVDGRLHE AISHTCLTSS AEYELALILK 480
  481 ELRWITEQLK KEDETSDITR DWKFAAMVVD RLCLIIFTLF TIIATLAVLF SAPHFIVSGV 540
  541 RG

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.66
Transmembrane Helix	18	36	0.72
Cytoplasmic	37	247	0.76
Transmembrane Helix	248	270	0.93
Non-Cytoplasmic	271	277	0.67
Transmembrane Helix	278	296	0.87
Cytoplasmic	297	311	0.54
Transmembrane Helix	312	333	0.88
Non-Cytoplasmic	334	343	0.54
Transmembrane Helix	344	359	0.58
Cytoplasmic	360	511	0.95
Transmembrane Helix	512	536	0.87
Non-Cytoplasmic	537	542	0.92