YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5524166
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKNFYTTPI TLLILTLNIA ATIVVINNSE LLIGDLMGFK SETVVIIQSL IYISLSLLFL  60
   61 SVLYNGLEKI KPLTTKLADS NSRPIAIFLI CLELLYITYV FNTGLFVAGN NERGGGVISA 120
  121 LFVLLNVDVL VLIFLTHVKT SKYKPIIIML WIISFLQRGW ISYFFILILI SFIDRRLKNK 180
  181 KNWKAGVVLI CFILALPFVE QIKNSIRSGE RISTQLTFFD YADSFNQQFM KVVGRVQTVS 240
  241 HVAFITDNIN QLQNLKNNGE STDFFEENFI YIIAKKLGSA DDKINTPDLL ARYISPSLDS 300
  301 SWNVNPSLIG WIFIQNDLYV LPIIWVVLLC FLFTMLSKII ANDLYAMNMR WLFWLVFLFP 360
  361 GWIFQFTAVI FSAFSIYFIK VHT

Type	Start	End	Confidence
Cytoplasmic	1	7	0.85
Transmembrane Helix	8	26	0.92
Non-Cytoplasmic	27	43	0.83
Transmembrane Helix	44	67	0.89
Cytoplasmic	68	84	0.94
Transmembrane Helix	85	107	0.89
Non-Cytoplasmic	108	115	0.83
Transmembrane Helix	116	138	0.90
Cytoplasmic	139	146	0.91
Transmembrane Helix	147	173	0.79
Non-Cytoplasmic	174	182	0.85
Transmembrane Helix	183	202	0.83
Cytoplasmic	203	317	0.86
Transmembrane Helix	318	341	0.88
Non-Cytoplasmic	342	355	0.70
Transmembrane Helix	356	379	0.86
Cytoplasmic	380	383	0.68