YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4530429
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGIFSVTGL GILLIGLIWL FAANADEGVQ SSRILAVFPF PGRSQYIFAE QFMKELAHRG  60
   61 HNVTVINTFG SDKNEPNFRV IGAKKIHEIM AAFGNADYTQ TASQWQMLTM TTQFLNLLTT 120
  121 SILDDAAVKD LLNSGEKFDL VIMEAVQTEA LFGLIQHFGA ETIGISSYGT DTHIDELMGN 180
  181 ISPLSYNPLL LSSRTEQMDF KDRVMNVFEA SVMWLHKRIV HLPSQRDLYA KYFPTARKSL 240
  241 DEVLDSFALM LLGQHFSLSY PRPYLPNMIE VGGLHLQQKR KVQPLAKELS EFVEQSEKGV 300
  301 IYFSMGSNIK SKDLPPSTRK MLMETFASVP QRVLWKFEDD QLPEKPDNVF ISKWFPQPDI 360
  361 LAHPNVKLFI THGGLLSTIE SIYFGKPILG LPIFYDQHLN VQRAKQAGYG LSADIWSVNA 420
  421 TELTPLIQEL LSSPSYAAAA QTKSKLFRDQ KETALERAIW WTEYVLRHKG AKHLRCASRD 480
  481 LDFIQFHGLD TWGLLIAITF VSLLIVVILI KCLQRVFVSL ISKIRKNRAE ASKLKTQ

Type	Start	End	Confidence
Signal Peptide	1	25	0.97
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	490	0.99
Transmembrane Helix	491	513	0.90
Cytoplasmic	514	537	0.94