YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4530427
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLALRIGFLL LTLPASMQAA RILAIFPFPG PSQYINVVPY LKELANRGHQ VTSVNAFPQK  60
   61 KPVVNFRDVF IPDVFNNYKE LINELSGPMN LWQENNFINK FFVSVTRCVL TNKEVTETLL 120
  121 APGKDHFDLI IVEALRSDAY YGFAAHFNAP IIGISTFGTD WNIDALVGNE SPLSYTPLAT 180
  181 GGLTDRMTFL ERLSNFVDTT VAWLNYRFVH MSEQEKMYAK YFPEASKRVQ LTDLNRNFSL 240
  241 VLLNQHFSLS FPRPYVPNMI EVGGLHISHK PAPLPKDLEE FIQGSGEHGV IYFSLGSNVL 300
  301 SKDLPADRKE LILKTFGSLP QRVLWKFEDD KLPGKPSNVF ISKWFPQPDI LAHPKVKLFI 360
  361 THGGLLSTIE SIHHGKPVLG LPFFYDQFLN VRRPTQAGFG LGLDHTTMTQ QEFKETIEIL 420
  421 LKEPRFAQIA RQMSERYRDQ PMSPLDTAIW WTEYVLRHKG AYHMRVAGQD LGFFAYHSLD 480
  481 VIGVLLGGAL LLVAIIVGVL GKLTDFGNAK KKLKSK

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	480	0.99
Transmembrane Helix	481	503	0.90
Cytoplasmic	504	516	0.93