YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15292533
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.99
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	219	0.99
Transmembrane Helix	220	239	0.96
Cytoplasmic	240	248	0.89
Transmembrane Helix	249	271	0.89
Non-Cytoplasmic	272	280	0.88
Transmembrane Helix	281	302	0.94
Cytoplasmic	303	320	0.93
Transmembrane Helix	321	342	0.92
Non-Cytoplasmic	343	371	0.91
Transmembrane Helix	372	391	0.95
Cytoplasmic	392	423	0.92
Transmembrane Helix	424	444	0.91
Non-Cytoplasmic	445	456	0.85
Transmembrane Helix	457	477	0.85
Cytoplasmic	478	522	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTLLVLRIS TVILVVLVIQ KSYADILECD YFDTVDISAA QKLQNGSYLF EGLIVPAILT  60
   61 GEYDFRILPD DSKQKVARHI RGCVCKLKPC VRFCCPHDHI MDNGVCYDNM SDEELAELDP 120
  121 FLNVTLDDGS VSRRHFKNEL IVQWDLPMPC DGMFYLDNRE EQDKYTLFEN GTFFRHFDRV 180
  181 TLRKREYCLQ HLTFADGNAT SIRIAPHNCL IVPSITGQTV VMISSLICMV LTIAVYLFVK 240
  241 KLQNLHGKCF ICYMVCLFMG YLFLLLDLWQ ISISFCKPAG FLGYFFVMAA FFWLSVISLH 300
  301 LWNTFRGSSH KANRFLFEHR FLAYNTYAWG MAVVLTGITV LADNIVENQD WNPRVGHEGH 360
  361 CWIYTQAWSA MLYFYGPMVF LIAFNITMFI LTAKRILGVK KDIQNFAHRQ ERKQKLNSDK 420
  421 QTYTFFLRLF IIMGLSWSLE IGSYFSQSNQ TWANVFLVAD YLNWSQGIII FILFVLKRST 480
  481 WRLLQERNHP KSTRSVISNR SMASRITVGT TPKNKARNSP LA