YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5815231
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TVIGRAASLY TDPFLLFSGM LTSYSLFGRL MKQQPIRLKN EYISRLMRIV PPLAALILFC  60
   61 TYVLPLWGSG PQWNLVVGHH ADICKKNWWR NLLFIHNYFG FSEMCLTHTH HLGIDTELFA 120
  121 VAPLLILALW RGQDVASSPC CCSARIQRLF RTADYMYSFP PHRSTVYIMG ILLGYVLRKY 180
  181 QNARLSSLQL RLGWLVATVC VLASLLGPAP MGDINYVYNS THAAIYAAFA PIAWCLFFSW 240
  241 IVFVSHNGYT NKLTKLFAWR GFQVSTKLSY AIYLTQFPVF FFNVGRRRHI HHYYNFVSII 300
  301 LDTNEFISIF LASVALTVFF DAPFQNLKKL LIKRPTAAKV VKDSKAKAAE SQDATTTTLA 360
  361 SQPSSTALLQ SHHPHSD

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.83
Transmembrane Helix	9	28	0.85
Cytoplasmic	29	48	0.85
Transmembrane Helix	49	68	0.94
Non-Cytoplasmic	69	158	0.81
Transmembrane Helix	159	177	0.64
Cytoplasmic	178	189	0.83
Transmembrane Helix	190	211	0.89
Non-Cytoplasmic	212	222	0.88
Transmembrane Helix	223	244	0.93
Cytoplasmic	245	263	0.76
Transmembrane Helix	264	282	0.76
Non-Cytoplasmic	283	305	0.77
Transmembrane Helix	306	324	0.89
Cytoplasmic	325	377	0.92