YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15291323
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	54	0.97
Transmembrane Helix	55	77	0.91
Non-Cytoplasmic	78	92	0.89
Transmembrane Helix	93	112	0.92
Cytoplasmic	113	121	0.74
Transmembrane Helix	122	145	0.90
Non-Cytoplasmic	146	151	0.78
Transmembrane Helix	152	173	0.72
Cytoplasmic	174	185	0.59
Transmembrane Helix	186	205	0.64
Non-Cytoplasmic	206	215	0.63
Transmembrane Helix	216	235	0.86
Cytoplasmic	236	371	0.82
Transmembrane Helix	372	394	0.86
Non-Cytoplasmic	395	404	0.71
Transmembrane Helix	405	427	0.80
Cytoplasmic	428	436	0.78
Transmembrane Helix	437	459	0.85
Non-Cytoplasmic	460	467	0.72
Transmembrane Helix	468	491	0.87
Cytoplasmic	492	503	0.76
Transmembrane Helix	504	525	0.82
Non-Cytoplasmic	526	576	0.78
Transmembrane Helix	577	595	0.57
Cytoplasmic	596	607	0.52
Transmembrane Helix	608	629	0.64
Non-Cytoplasmic	630	668	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVGGQETTY EPLDGRGSGR SRSSHSTTGS GLRRPGSMDS PEFDNRAPKD QRHSVYLALL  60
   61 AAGIGFVLPY NSFIIAADYW QARFPGRPVA LDMSMTYIFV AFGTVLMNNI VLSVAPFQSR 120
  121 VLFGYMISFT TLIFVAVCEV AWHMFATNTA YLVNMSAVAL TAIGCTVQQS SFYGFASMLP 180
  181 KQYTQAVMAG ESIAGFLVSS NRVVTKLLIN NDRVSTVIFF LTSTLYILFS YLLHVATINS 240
  241 PFVRFHVEAC SKIVLRPDEQ EIDGVPSSTR YGVLSMDGTH TTTTSVGPPG TGNTLSVSNP 300
  301 VYELSNPTAG ESSIEALGQL PELPATPPAQ EPTTPTTVAF KVEHVITPRR CRPSKLGDIR 360
  361 EGFVTRWRVA QVIYPHMVCI ALAYCVTLSL YPGIEVEVQS CALRSWMPVL LMFCFNTSDV 420
  421 VGKILAASPY PWSRRQLILL SGLRIVLVPL LLLCCAPRQR PVISGETAPF VFTIALGITN 480
  481 GLAGSLPMML APAKVPGTLK EVTGNIMTLS YNVGLTVGSL IGYVFESMLG PQLVNPCPTY 540
  541 PYVPASMLEQ FHGHGHGHGH LPHPLPLTST STMSPPTTGA TTLAPLLLNT TLATLSSSSS 600
  601 TTSTASPALA TVITTTALAL ASTVASGSAE VINATISSIL STVSSSVGDI SDEMTTDPQT 660
  661 PDALLENI