YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3219735, gi\|3...
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLPSFLRRF WSIATSPSSF LSVGFLTLGG FVGGVLFWGG FNTALEATNT EAFCTSCHEM  60
   61 QSNVFEELTR TVHYTNRSGV RAGCPDCHVP HEWTDKIARK MQASKEVWGH LFGTIDTRRK 120
  121 FLDNRLRLAE HEWARLKAND SLECRNCHSE VAMDFTRQTD RAAQIHTQYL IQTEGYTCID 180
  181 CHKGIAHELP DMRGIDPGWL PPADLRAALP DHGSFDLEGA RAYVAD

Type	Start	End	Confidence
Cytoplasmic	1	19	0.75
Transmembrane Helix	20	41	0.80
Non-Cytoplasmic	42	226	0.96