YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GONS4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.95
Transmembrane Helix	12	36	0.82
Non-Cytoplasmic	37	43	0.72
Transmembrane Helix	44	66	0.81
Cytoplasmic	67	78	0.80
Transmembrane Helix	79	97	0.87
Non-Cytoplasmic	98	104	0.74
Transmembrane Helix	105	123	0.89
Cytoplasmic	124	131	0.83
Transmembrane Helix	132	150	0.95
Non-Cytoplasmic	151	156	0.83
Transmembrane Helix	157	176	0.92
Cytoplasmic	177	186	0.81
Transmembrane Helix	187	209	0.90
Non-Cytoplasmic	210	229	0.90
Transmembrane Helix	230	250	0.94
Cytoplasmic	251	257	0.79
Transmembrane Helix	258	279	0.81
Non-Cytoplasmic	280	283	0.74
Transmembrane Helix	284	304	0.81
Cytoplasmic	305	341	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSRFDSNK QLTTSSLVIG YALCSSLLAV INKLAITYFN YPGLLTALQY LTCTVAVYLL  60
   61 GKSGLINHDP FTWDTAKKFL PAAIVFYLAI FTNTNLLRHA NVDTFIVFRS LTPLLVAIAD 120
  121 TVFRSQPLPS RLTFLSLVVI LAGAVGYVAT DSSFTLTAYS WALAYLVTIT TEMVYIKHMV 180
  181 SNIKLNIWGL VLYNNLLSLM IAPVFWFLTG EFTEVFAALS ENRGNLFEPY AFSSVAASCV 240
  241 FGFLISYFGF AARNAISATA FTVTGVVNKF LTVVINVLIW DKHATPVGLV CLLFTICGGV 300
  301 GYQQSVKLDK PIEKVSEKDS EKGEEDEELT QLVPGKLASV V