YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GONS2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAVKLEAIV CHEPDESELS HLSDNGSKTK NGVVFQLLDQ KSSEHRWFSE RFLRWRRRYL  60
   61 PVDGDNRRDH GSVKQSGPLV SGAAYCISSC SMIILNKIVL SSYNFNAGVS LMLYQNLISC 120
  121 LVVAVLDISG VVSVEKFNWK LIRVWMPVNV IFVGMLVSGM YSLKYINVAM VTILKNATNI 180
  181 LTGIGEVYMF RKRQNNKVWA AMFMMIISAI SGGITDLTFD AVGYTWQLAN CFLTASYSLT 240
  241 LRRVMDKAKQ STKSGSLNEV SMVLLNNLLS IPFGIILIIL LGEWRYVIST DVTKDSMFWV 300
  301 VATASGFLGL AISFTSMWFL HQTGPTTYSL VGSLNKVPIS LAGLVLFNVP LSLPNLFSIL 360
  361 FGLFAGVVFA RAKMS

Type	Start	End	Confidence
Cytoplasmic	1	76	0.95
Transmembrane Helix	77	100	0.82
Non-Cytoplasmic	101	110	0.82
Transmembrane Helix	111	132	0.89
Cytoplasmic	133	140	0.80
Transmembrane Helix	141	163	0.86
Non-Cytoplasmic	164	170	0.63
Transmembrane Helix	171	190	0.85
Cytoplasmic	191	197	0.92
Transmembrane Helix	198	219	0.90
Non-Cytoplasmic	220	262	0.69
Transmembrane Helix	263	287	0.81
Cytoplasmic	288	296	0.63
Transmembrane Helix	297	320	0.91
Non-Cytoplasmic	321	350	0.60
Transmembrane Helix	351	370	0.89
Cytoplasmic	371	375	0.71