YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14388961
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKKQSAGLV LWGAILFVGW NALLLLFFWT RPAPGRPPSD SAIDDDPASL TREVFRLAED  60
   61 AEVELERQRG LLQQIREHHA LWRQRWKVPT VAPPAWPRVP ATPSPAVIPI LVIACDRSTV 120
  121 RRCLDKLLHY RPSAEHFPII VSQDCGHEET AQVIASYGSA VTHIRQPDLS NIAVPPDHRK 180
  181 FQGYYKIARH YRWALGQIFN KFKFPAAVVV EDDLEVAPDF FEYFQATYPL LRTDPSLWCV 240
  241 SAWNDNGKEQ MVDSSKPELL YRTDFFPGLG WLLMAELWTE LEPKWPKAFW DDWMRRPEQR 300
  301 KGRACIRPEI SRTMTFGRKG VSHGQFFDQH LKFIKLNQQF VSFTQLDLSY LQREAYDRDF 360
  361 LARVYSAPLL QVEKVRTNDQ KELGEVRVQY TSRDSFKAFA KALGVMDDLK SGVPRAGYRG 420
  421 VVTFQFRGRR VHLAPPQTWE GYDPSWN

Type	Start	End	Confidence
Cytoplasmic	1	7	0.85
Transmembrane Helix	8	29	0.85
Non-Cytoplasmic	30	447	0.97