YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15010454
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLLSDPSIS TQSKLVDGLA RHVRKVCYAL YVAGVAWFFC LALPEFNHGT YLSENALSPG  60
   61 LVYPEIRIDA NRLAIQLLEE LQRERKDHLS TTPHAWIAAK MNEFGLETHT HNYTLRYPFG 120
  121 GGKEYHGKNI YGILRAPRIA STEGIVFAAP YRAASSVHTD ISASVPLLLA FADFARRKNY 180
  181 WAKDLIFLIT EQEQLGMQAW LEAYHDGDRE LDLSKAYLRP GNLPARAGSL QAALNIEVQD 240
  241 LEIDHVDVRI EGLNGKLPNL DMFNLVQRIM AREGIASGYK QAPRKKRRHS QSHFEQNFRQ 300
  301 MLTMLASQSS GVPTGNHGLF HRYRIDALTI AANRRATHAT LKGSPGSAAV PLLKAIEGIA 360
  361 RSLNNLLERF HQSFFFYVIV SNDRYISIGD YMPALVALVA CAFLKAYLTW STLPATNAEL 420
  421 EKAAGWLREH EQEAELEENL EPDKFELPYG SVLIYLTATL LIGFLCNVLP LQQYFLEIPM 480
  481 GAAPLTTSVL SFLSLIGFVL PFVVVLPPGG LELLHVAFLL IYGCALIVIG LLNFALGLFA 540
  541 AVLTVPLVIA LETKEENSAA R

Type	Start	End	Confidence
Cytoplasmic	1	26	0.73
Transmembrane Helix	27	46	0.59
Non-Cytoplasmic	47	451	0.70
Transmembrane Helix	452	471	0.92
Cytoplasmic	472	482	0.64
Transmembrane Helix	483	506	0.85
Non-Cytoplasmic	507	517	0.62
Transmembrane Helix	518	549	0.81
Cytoplasmic	550	561	0.77