YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113648765, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSVFSGDET APFFGFLGAA SALVFSCMGA AYGTAKSGVG VASMGVMRPE LVMKSIVPVV  60
   61 MAGVLGIYGL IIAVIISTGI NPKAKPYYLF DGYAHLSSGL ACGLAGLAAG MAIGIVGDAG 120
  121 VRANAQQPKL FVGMILILIF AEALALYGLI VGIILSSRAG QSRAD

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.62
Transmembrane Helix	13	35	0.92
Cytoplasmic	36	54	0.60
Transmembrane Helix	55	77	0.92
Non-Cytoplasmic	78	93	0.59
Transmembrane Helix	94	117	0.88
Cytoplasmic	118	129	0.57
Transmembrane Helix	130	155	0.87
Non-Cytoplasmic	156	165	0.63