YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|5019620
Protein type: Globular with Signal Peptide
Type Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSPALQPLS MAGLQLMTPA SSPMGPFFGL PWQQEAIHDN IYTPRKYQVE LLEAALDHNT  60
   61 IVCLNTGSGK TFIASTTLLK SCLYLDLGET SARNGKRTVF LVNSANQVAQ QVSAVRTHSD 120
  121 LKVGEYSNLE VNASWTKERW NQEFTKHQVL IMTCYVALNV LKNGYLSLSD INLLVFDECH 180
  181 LAILDHPYRE FMKLCEICPS CPRILGLTAS ILNGKWDPED LEEKFQKLEK ILKSNAETAT 240
  241 DLVVLDRYTS QPCEIVVDCG PFTDRSGLYE RLLMELEEAL NFINDCNISV HSKERDSTLI 300
  301 SKQILSDCRA VLVVLGPWCA DKVAGMMVRE LQKYIKHEQE ELHRKFLLFT DTFLRKIHAL 360
  361 CEEHFSPASL DLKFVTPKVI KLLEILRKYK PYERHSFESV EWYNNRNQDN YVSWSDSEDD 420
  421 DEDEEIEEKE KPETNFPSPF TNILCGIIFV ERRYTAVVLN RLIKEAGKQD PELAYISSNF 480
  481 ITGHGIGKNQ PRNNTMEAEF RKQEEVLRKF RAHETNLLIA TSIVEEGVDI PKCNLVVRFD 540
  541 LPTEYRSYVQ SKGRARAPIS NYIMLADTDK IKSFEEDLKT YKAIEKILRN KCSKSVDTGE 600
  601 TDIDPVMDDD HVFPPYVLRP DDGGPRVTIN TAIGHINRYC ARLPSDPFTH LAPKCRTREL 660
  661 PDGTFYSTLY LPINSPLRAS IVGPPMSCVR LAERVVALIC CEKLHKIGEL DDHLMPVGKE 720
  721 TVKYEEELDL HDEEETSVPG RPGSTKRRQC YPKAIPECLR DSYPRPDQPC YLYVIGMVLT 780
  781 TPLPDELNFR RRKLYPPEDT TRCFGILTAK PIPQIPHFPV YTRSGEVTIS IELKKSGFML 840
  841 SLQMLELITR LHQYIFSHIL RLEKPALEFK PTDADSAYCV LPLNVVNDSS TLDIDFKFME 900
  901 DIEKSEARIG IPSTKYTKET PFVFKLEDYQ DAVIIPRYRN FDQPHRFYVA DVYTDLTPLS 960
  961 KFPSPEYETF AEYYKTKYNL DLTNLNQPLL DVDHTSSRLN LLTPRHLNQK GKALPLSSAE1020
 1021 KRKAKWESLQ NKQILVPELC AIHPIPASLW RKAVCLPSIL YRLHCLLTAE ELRAQTASDA1080
 1081 GVGVRSLPAD FRYPNLDFGW KKSIDSKSFI SISNSSSAEN DNYCKHSTIV PENAAHQGAN1140
 1141 RTSSLENHDQ MSVNCRTLLS ESPGKLHVEV SADLTAINGL SYNQNLANGS YDLANRDFCQ1200
 1201 GNQLNYYKQE IPVQPTTSYS IQNLYSYENQ PQPSDECTLL SNKYLDGNAN KSTSDGSPVM1260
 1261 AVMPGTTDTI QVLKGRMDSE QSPSIGYSSR TLGPNPGLIL QALTLSNASD GFNLERLEML1320
 1321 GDSFLKHAIT TYLFCTYPDA HEGRLSYMRS KKVSNCNLYR LGKKKGLPSR MVVSIFDPPV1380
 1381 NWLPPGYVVN QDKSNTDKWE KDEMTKDCML ANGKLDEDYE EEDEEEESLM WRAPKEEADY1440
 1441 EDDFLEYDQE HIRFIDNMLM GSGAFVKKIS LSPFSTTDSA YEWKMPKKSS LGSMPFSSDF1500
 1501 EDFDYSSWDA MCYLDPSKAV EEDDFVVGFW NPSEENCGVD TGKQSISYDL HTEQCIADKS1560
 1561 IADCVEALLG CYLTSCGERA AQLFLCSLGL KVLPVIKRTD REKALCPTRE NFNSQQKNLS1620
 1621 VSCAAASVAS SRSSVLKDSE YGCLKIPPRC MFDHPDADKT LNHLISGFEN FEKKINYRFK1680
 1681 NKAYLLQAFT HASYHYNTIT DCYQRLEFLG DAILDYLITK HLYEDPRQHS PGVLTDLRSA1740
 1741 LVNNTIFASL AVKYDYHKYF KAVSPELFHV IDDFVQFQLE KNEMQGMDSE LRRSEEDEEK1800
 1801 EEDIEVPKAM GDIFESLAGA IYMDSGMSLE TVWQVYYPMM RPLIEKFSAN VPRSPVRELL1860
 1861 EMEPETAKFS PAERTYDGKV RVTVEVVGKG KFKGVGRSYR IAKSAAARRA LRSLKANQPQ1920
 1921 VPNS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle