YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11932092
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQKLRMAHQ EFSIVLKGLI FLFFNMNMQS AIADYGGWEG AHATFYGGGD ASGTMGGACG  60
   61 YGNLYSQGYG TNTAALSTAL FNNGLSCGSC YEMRCNDDPR WCKPGSIIVT ATNFCPPNPS 120
  121 LANNNGGWCN PPLQHFDMAE PAFLQIAEYR AGIVPVSFRR VPCMKKGGIR FTINGHSYFN 180
  181 LVLVTNVGGA GDVHSVSIKG SRTGWQSMSR NWGQNWQSNS YLNGQPLSFQ VTTSDGRTMT 240
  241 SYNVAPSNWQ FGQTFQGAQF

Type	Start	End	Confidence
Cytoplasmic	1	12	0.66
Transmembrane Helix	13	33	0.62
Non-Cytoplasmic	34	50	0.77
Transmembrane Helix	51	65	0.38
Cytoplasmic	66	260	0.53