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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|7488988
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.88
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMVTSKVFS SLQFFTVFYL FTVAFASTEE ATALLKWKAT FKNQNNSFLA SWTTSSNACK  60
   61 DWYGVVCLNG RVNTLNITNA SVIGTLYAFP FSSLPFLENL DLSNNNISGT IPPEIGNLTN 120
  121 LVYLDLNTNQ ISGTIPPQIG SLAKLQIIRI FNNHLNGFIP EEIGYLRSLT KLSLGINFLS 180
  181 GSIPASLGNM TNLSFLFLYE NQLSGFIPEE IGYLRSLTKL SLDINFLSGS IPASLGNLNN 240
  241 LSFLYLYNNQ LSGSIPEEIG YLRSLTKLSL GINFLSGSIP ASLGNLNNLS RLDLYNNKLS 300
  301 GSIPEEIGYL RSLTYLDLGE NALNGSIPAS LGNLNNLFML YLYNNQLSGS IPEEIGYLRS 360
  361 LTYLDLGENA LNGSIPASLG NLNNLSRLDL YNNKLSGSIP EEIGYLRSLT YLDLGENALN 420
  421 GSIPASLGNL NNLFMLYLYN NQLSGSIPEE IGYLSSLTEL YLGNNSLNGS IPASLGNLNN 480
  481 LFMLYLYNNQ LSGSIPEEIG YLSSLTELFL GNNSLNGSIP ASLGNLNNLS RLYLYNNQLS 540
  541 GSIPASFGNM RNLQTLFLSD NDLIGEIPSF VCNLTSLEVL YMSRNNLKGK VPQCLGNISD 600
  601 LHILSMSSNS FRGELPSSIS NLTSLKILDF GRNNLEGAIP QFFGNISSLQ VFDMQNNKLS 660
  661 GTLPTNFSIG CSLISLNLHG NELADEIPRS LDNCKKLQVL DLGDNQLNDT FPMWLGTLPE 720
  721 LRVLRLTSNK LHGPIRSSGA EIMFPDLRII DLSRNAFSQD LPTSLFEHLK GMRTVDKTME 780
  781 EPSYESYYDD SVVVVTKGLE LEIVRILSLY TIIDLSSNKF EGHIPSVLGD LIAIRVLNVS 840
  841 HNALQGYIPS SLGSLSILES LDLSFNQLSG EIPQQLASLT FLEVLNLSHN YLQGCIPQGP 900
  901 QFRTFESNSY EGNDGLRGYP VSKGCGKDPV SEKNYTVSAL EDQESNSEFF NDFWKAALMG 960
  961 YGSGLCIGIS IIYILISTGN LRWLARIIEE LEHKIIVQRR KKQRGQRNYR RRNNRF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle