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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|3894391
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.89
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMVTSKVFS SLQFFTVFYL FTVAFASTEE ATALLKWKAT FKNQNNSFLA SWTTSSNACK  60
   61 DWYGVVCLNG RVNTLNITNA SVIGTLYAFP FSSLPFLENL DLSNNNISGT IPPEIGNLTN 120
  121 LVYLDLNTNQ ISGTIPPQIG SLAKLQIIRI FNNHLNGFIP EEIGYLRSLT KLSLGINFLS 180
  181 GSIPASLGNM TNLSFLFLYE NQLSGFIPEE IGYLRSLTKL SLDINFLSGS IPASLGNLNN 240
  241 LSFLYLYNNQ LSGSIPEEIG YLRSLTYLDL KENALNGSIP ASLGNLNNLS RLYLYNNQLS 300
  301 GSIPEEIGYL SSLTNLYLGN NSLIGLIPAS FGNMRNLQAL FLNDNNLIGE IPSFVCNLTS 360
  361 LELLYMPRNN LKGKVPQCLG NISDLLVLSM SSNSFSGELP SSISNLTSLK ILDFGRNNLE 420
  421 GAIPQCFGNI SSLQVFDMQN NKLSGTLPTN FSIGCSLISL NLHGNELEDE IPWSLDNCKK 480
  481 LQVLDLGDNQ LNDTFPMWLG TLPELRVLRL TSNKLHGPIR SSGAEIMFPD LRIIDLSRNA 540
  541 FSQDLPTSLF EHLKGMRTVD KTMEEPSYEI YYDSVVVVTK GLELEIVRIL SLYTVIDLSS 600
  601 NKFEGHIPSV LGDLIAIRVL NVSHNALQGY IPSSLGSLSI LESLDLSFNQ LSGEIPQQLA 660
  661 SLTFLEFLNL SHNYLQGCIP QGPQFRTFES NSYIGNDGLR GYPVSKGCGK DPVSEKNYTV 720
  721 SALEDQESNS KFFNDFWKAA LMGYGSGLCF GISIIYFLIS TGNLRWLARI IEELEHKIIM 780
  781 QRRKKQRGQR NYRRRNNRF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle