YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|9651941
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.97
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVLVLFFLF LHSLQAARIS EYRALLSFKA SSLTDDPTHA LSSWNSSTPF CSWFGLTCDS  60
   61 RRHVTSLNLT SLSLSGTLSD DLSHLPFLSH LSLADNKFSG PIPASFSALS ALRFLNLSNN 120
  121 VFNATFPSQL NRLANLEVLD LYNNNMTGEL PLSVAAMPLL RHLHLGGNFF SGQIPPEYGT 180
  181 WQHLQYLALS GNELAGTIAP ELGNLSSLRE LYIGYYNTYS GGIPPEIGNL SNLVRLDAAY 240
  241 CGLSGEIPAE LGKLQNLDTL FLQVNALSGS LTPELGSLKS LKSMDLSNNM LSGEVPASFA 300
  301 ELKNLTLLNL FRNKLHGAIP EFVGELPALE VLQLWENNFT GSIPQNLGNN GRLTLVDLSS 360
  361 NKITGTLPPN MCYGNRLQTL ITLGNYLFGP IPDSLGKCKS LNRIRMGENF LNGSIPKGLF 420
  421 GLPKLTQVEL QDNLLTGQFP EDGSIATDLG QISLSNNQLS GSLPSTIGNF TSMQKLLLNG 480
  481 NEFTGRIPPQ IGMLQQLSKI DFSHNKFSGP IAPEISKCKL LTFIDLSGNE LSGEIPNKIT 540
  541 SMRILNYLNL SRNHLDGSIP GNIASMQSLT SVDFSYNNFS GLVPGTGQFG YFNYTSFLGN 600
  601 PELCGPYLGP CKDGVANGPR QPHVKGPFSS SLKLLLVIGL LVCSILFAVA AIFKARALKK 660
  661 ASEARAWKLT AFQRLDFTVD DVLDCLKEDN IIGKGGAGIV YKGAMPNGGN VAVKRLPAMS 720
  721 RGSSHDHGFN AEIQTLGRIR HRHIVRLLGF CSNHETNLLV YEYMPNGSLG EVLHGKKGGH 780
  781 LHWDTRYKIA VEAAKGLCYL HHDCSPLIVH RDVKSNNILL DSNFEAHVAD FGLAKFLQDS 840
  841 GASECMSAIA GSYGYIAPEY AYTLKVDEKS DVYSFGVVLL ELVTGRKPVG EFGDGVDIVQ 900
  901 WVRKMTDSNK EGVLKVLDSR LPSVPLHEVM HVFYVAMLCV EEQAVERPTM REVVQILTEL 960
  961 PKPPSSKHAI TESSLSSSNS LGSPTTASKE PKDNQHPPQS PPPDLLSI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle