YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	EXL1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.61
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERCRSGHHR IISYYLSSSL ILFWCIFVLV LLSTTSTTNA LVKIPKNTTV PAVIVFGDSI  60
   61 VDAGNNDDMI TEARCDYAPY GIDFDGGVAT GRFSNGKVPG DIVAEELGIK PNIPAYRNPN 120
  121 LKPEELLTGV TFASGGAGYV PLTTKIAVGG IPLPQQLIYF EEYIEKLKQM VGEKRTKFII 180
  181 KNSLFVVICG SNDIANDFFT LPPVRLHYTV ASFTALMADN ARSFAQTLYG YGARRILVFG 240
  241 APPIGCVPSQ RTVAGGPTRD CVARFNDAAK LFNTKLSANI DVLSRTLQDP TIIYIDIYSP 300
  301 LLDLILNPHQ YGFKVANKGC CGTGLIEVTA LCNNYTASVC PIRSDYVFWD SFHPTEKAYR 360
  361 IIVAKLLDRY LNRFF

Type	Start	End	Confidence
Cytoplasmic	1	10	0.60
Transmembrane Helix	11	32	0.56
Non-Cytoplasmic	33	375	0.98