YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15004525
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLLSDRPNLS QKKEKLGSPG GSPTAAAAVA AAAMLPSIPM LPYPASYVGS YLFSLGIQQQ  60
   61 QQQQQQQQQQ HAAAAAAAAA AAAALQQHPH VSSSPGSLYH PYAQLFASKR KSSGFSNYEG 120
  121 CYPSPPLSAN PNSQQLPPLH NLYGSPVVGG LQLPEPGSFC TSPSASSSAS LDYTNNFDEP 180
  181 QGKRFKHESS CSPNSSPLKN HSSGGPVEIT PLINDYADSS KRIRTAFTST QLLELEREFS 240
  241 HNAYLSRLRR IEIANRLRLS EKQVKI

Type	Start	End	Confidence
Cytoplasmic	1	20	0.71
Transmembrane Helix	21	43	0.58
Non-Cytoplasmic	44	266	0.83