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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|46369973
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.94
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKKKPLSAG RAPLFLFLCQ MISALDVPLD PKLLDDLVQP PTITQQSPKD YIIDPRENIV  60
   61 IQCEAKGKPP PSFSWTRNGT HFDIDKDPLV TMKPGSGTLV INIMSEGKAE TYEGVYQCTA 120
  121 RNERGAAVSN NIVVRPSRSP LWTKERLEPI ILRSGQSLVL PCRPPIGLPP AIIFWMDNSF 180
  181 QRLPQSERVS QGLNGDLYFS NVLPEDTRED YICYARFNHT QTIQQKQPIS LKVISVDELN 240
  241 DTIAANLSDT EFYGAKSSKE RPPTFLTPEG NESHKEELRG NVLSLECIAE GLPTPVIYWI 300
  301 KEDGTLPVNR TFYRNFKKTL QIIHVSEADS GNYQCIAKNA LGAVHHTISV TVKAAPYWIV 360
  361 APHNLVLSPG ENGTLICRAN GNPKPRISWL TNGVPVEIAL DDPSRKIDGD TIMFSNVQES 420
  421 SSAVYQCNAS NKYGYLLANA FVNVLAEPPR ILTSANTLYQ VIANRPALLD CAFFGSPMPT 480
  481 IEWFKGTKGS ALHEDIYVLH DNGTLEIPVA QKDSTGTYTC VARNKLGMAK NEVHLEIKDP 540
  541 TRFIKQPEYA VVQRGSKVSF ECKVKHDHTL IPTILWLKDN GELPNDERFS VDKDHLVVSD 600
  601 VKDEDGGTYT CAANTTLDSV SASAVLRVVA PTPTPAPIYD VPNPPFDLEL TNQLDKSVQL 660
  661 TWTPGDDNNS PITKFIIEYE DAMHEAGLWR HQAEVSGTQT TAQLKLSPYV NYSFRVMAEN 720
  721 SIGRSVPSEA SEQYLTKAAE PDQNPTAVEG LGTEPDNLVI TWKPLNGFQS NGPGLQYKVS 780
  781 WRQKDGDDEW TSVVVANVSK YIVSGTPTFV PYLIKVQALN DVGFAPEPAA VMGHSGEDLP 840
  841 MVAPGNVRVS VVNSTLAEAH WDPVPPKSVR GHLQGYRIYY WKAQSSSKRN RRHIEKKILT 900
  901 FQGSKTHGML PGLQPYSHYV LNVRVVNGKG EGPASADRGF HTPEGVPSAP SSLKIVNPTL 960
  961 DSLTLEWDPP SHPNGILTEY ILKYQPINST HELGPLVDLK IPANKTRWTL KNLNFSTRYK1020
 1021 FYFYAQTSVG SGSQITEEAI TTVDEGAGKA MASRQVDIAT QGWFIGLMCA VALLILILLI1080
 1081 VCFIRRNKGG KYPVKEKEDA HADPEIQPMK EDDGTFGEYS DAEDHKPLKK GSRTPSDRTV1140
 1141 KKEDSDDSLV DYGEGVNGQF NEDGSFIGQY SGKKEKEPAE GNESSEAPSP VNAMNSFV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle