YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46358911
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSPAEWYNS LPPISKAFGT LCVVTATLLQ LNILDGYFIV LYYPLVFKKF QIWRLFTTFI  60
   61 CLGGFSMNFG IRLLMIARYG VQLEKGVFER RTADFLWMMI FGAISLLVLS AIPYLQLPLL 120
  121 GIPMVSMLLY VWSREYPNAQ INIYGLILLR SFYLPWVMLA LDVIFGSSII PGLMGIMVGH 180
  181 LYYFFTVLHP LATGKNYLKT PKWVHWIVAR FGIGVQANSP VRPASTGSGA FRGTSHRLNQ 240
  241 DPASTGTGAF RGRSYRLNQD

Type	Start	End	Confidence
Cytoplasmic	1	16	0.88
Transmembrane Helix	17	39	0.84
Non-Cytoplasmic	40	51	0.85
Transmembrane Helix	52	76	0.87
Cytoplasmic	77	94	0.91
Transmembrane Helix	95	117	0.89
Non-Cytoplasmic	118	151	0.58
Transmembrane Helix	152	185	0.73
Cytoplasmic	186	260	0.65