YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13182949
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLIDRFESEV MNADEHVQSS DSASDNSFDG IHHQHKSYDP VITTIYFDNE FFELYNNKLL  60
   61 KRNCCPTLRL RWTGKFSEKP DIFLEKRMFI ENKDTGNSDF EEIRLQMKPK FINGFIFDDD 120
  121 KSYKKNVLRK LTESGTPESE LKKIENNFNE IQNFIQEEKL EPVIRTTYTR TAFQIPGDDR 180
  181 IRITIDSNVT YIREDAFDKD RPIREPKNWH RTDIDSNVAN PMRFLRPGEY SNFPYSVMEI 240
  241 KIKNPSANLS SESNIDFSGV QLPKKHGGWI QELTNSHLVK EVPKFSLYIQ GVAALFAEEE 300
  301 KLDILPFWLP ELNTDIRKDP KQAYEDEQKK INKQKDIHSK IESMRRLSRV PKPSSDITTS 360
  361 TVTEVSTNRA ADLEDHESSD EEDSLSTRER RTGQKKKSKT KLTFLQILGA GRDSKLIGVD 420
  421 SEDEEIELPE GVKKPTSYIK NAGPVKVEAK VWLANERTFL RWLSVTVLLS VLTFSVSNSV 480
  481 RRAEFPNLAK RLADLYFAAT VFTALWAYYS YKKRLRIIRE RSGEYLDAPF GPQLVAFFLF 540
  541 FTLIINFVSV FRETGRKQAT AEVDLESLHP HLESIFNFVY KIVKE

Type	Start	End	Confidence
Non-Cytoplasmic	1	458	0.74
Transmembrane Helix	459	480	0.78
Cytoplasmic	481	491	0.56
Transmembrane Helix	492	510	0.91
Non-Cytoplasmic	511	529	0.62
Transmembrane Helix	530	551	0.88
Cytoplasmic	552	585	0.67