YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37722567
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSHQFLINQ TTLAAPPVHL VEKPSLINGI PDNILALIAP VIAYYSYSGF FYVIDTLEIA  60
   61 ELYRIHPPEE VSSRNKATKF DVLKDVVLQH FIQSVVGYIF TYFDPIQYTG DEEYQAWKLQ 120
  121 QTLPFLPFDV AYYWNMYGWS CLKIGLAFLI IDSWQYWLHR IMHLNKTLYK RFHSRHHRLY 180
  181 VPYAFGALYN DPFEGFLLDT LGTGIAAIVT QLTPRESIVL YTFSTLKTVD DHCGYSLPYD 240
  241 PFQILFPNNS IYHDIHHQQF GIKTNFSQPF FTHWDVFSNT RYKEIDEYRE KQKAITIAKY 300
  301 KEFLHDREIA KQKKKAEIYK DKKTD

Type	Start	End	Confidence
Cytoplasmic	1	32	0.56
Transmembrane Helix	33	47	0.46
Non-Cytoplasmic	48	135	0.73
Transmembrane Helix	136	158	0.60
Cytoplasmic	159	325	0.58