YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13111809
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EVEILDAKTR EKLCFLDKVE PHATIAEIKN LFTKTHPQWY PARQSLRLDP KGKSLKDEDV  60
   61 LQKLPVGTTA TLYFRDLGAQ ISWVTVFLTE YAGPLFIYLL FYFRVPFIYG HKYDFTSSRH 120
  121 TVVHLACICH SFHYIKRLLE TLFVHRFSHG TMPLRNIFKN CTYYWGFAAW MAYYINHPLY 180
  181 TPPTYGAQQV KLALAIFVIC QLGNFSIHMA LRDLRPAGSK TRKIPYPTKN PFTWLFLLVS 240
  241 CPNYTYEVGS WIGFAIMTQC LPVALFSLVG FTQMTIWAKG KHRSYLKEFR DYPPLRMPII 300
  301 PFLL

Type	Start	End	Confidence
Cytoplasmic	1	80	0.90
Transmembrane Helix	81	102	0.82
Non-Cytoplasmic	103	119	0.67
Transmembrane Helix	120	135	0.77
Cytoplasmic	136	155	0.88
Transmembrane Helix	156	175	0.85
Non-Cytoplasmic	176	191	0.76
Transmembrane Helix	192	211	0.93
Cytoplasmic	212	229	0.91
Transmembrane Helix	230	246	0.92
Non-Cytoplasmic	247	254	0.64
Transmembrane Helix	255	277	0.89
Cytoplasmic	278	304	0.97